AAFC00000000.5 Bos taurus
- Master
# of Contigs: 42,250 # of Proteins: 0 # of Scaffolds/Chrs: 2,904 Total length: 2,674,312,785 bp BioProject: PRJNA12555 BioSample: SAMN02898106 Keywords: WGS Annotation: Contigs Organism: Bos taurus – show lineagehide lineage Biosource: /breed = Hereford/mol_type = genomic/sex = pooled male and female/tissue_type = bloodWGS: AAFC05000001:AAFC05042250 Scaffolds: CM000177:CM000206, KQ557226:KQ560099 2,904 scaffolds, total length is 5,344,647,046 basesReference: The genome sequence of taurine cattle: a window to ruminant biology and evolution : Science 324 (5926), 522-528 (2009) – show 308 authorshide authorsBovine Genome Sequencing and Analysis Consortium, Elsik,C.G., Tellam,R.L., Worley,K.C., Gibbs,R.A., Muzny,D.M., Weinstock,G.M., Adelson,D.L., Eichler,E.E., Elnitski,L., Guigo,R., Hamernik,D.L., Kappes,S.M., Lewin,H.A., Lynn,D.J., Nicholas,F.W., Reymond,A., Rijnkels,M., Skow,L.C., Zdobnov,E.M., Schook,L., Womack,J., Alioto,T., Antonarakis,S.E., Astashyn,A., Chapple,C.E., Chen,H.C., Chrast,J., Camara,F., Ermolaeva,O., Henrichsen,C.N., Hlavina,W., Kapustin,Y., Kiryutin,B., Kitts,P., Kokocinski,F., Landrum,M., Maglott,D., Pruitt,K., Sapojnikov,V., Searle,S.M., Solovyev,V., Souvorov,A., Ucla,C., Wyss,C., Anzola,J.M., Gerlach,D., Elhaik,E., Graur,D., Reese,J.T., Edgar,R.C., McEwan,J.C., Payne,G.M., Raison,J.M., Junier,T., Kriventseva,E.V., Eyras,E., Plass,M., Donthu,R., Larkin,D.M., Reecy,J., Yang,M.Q., Chen,L., Cheng,Z., Chitko-McKown,C.G., Liu,G.E., Matukumalli,L.K., Song,J., Zhu,B., Bradley,D.G., Brinkman,F.S., Lau,L.P., Whiteside,M.D., Walker,A., Wheeler,T.T., Casey,T., German,J.B., Lemay,D.G., Maqbool,N.J., Molenaar,A.J., Seo,S., Stothard,P., Baldwin,C.L., Baxter,R., Brinkmeyer-Langford,C.L., Brown,W.C., Childers,C.P., Connelley,T., Ellis,S.A., Fritz,K., Glass,E.J., Herzig,C.T., Iivanainen,A., Lahmers,K.K., Bennett,A.K., Dickens,C.M., Gilbert,J.G., Hagen,D.E., Salih,H., Aerts,J., Caetano,A.R., Dalrymple,B., Garcia,J.F., Gill,C.A., Hiendleder,S.G., Memili,E., Spurlock,D., Williams,J.L., Alexander,L., Brownstein,M.J., Guan,L., Holt,R.A., Jones,S.J., Marra,M.A., Moore,R., Moore,S.S., Roberts,A., Taniguchi,M., Waterman,R.C., Chacko,J., Chandrabose,M.M., Cree,A., Dao,M.D., Dinh,H.H., Gabisi,R.A., Hines,S., Hume,J., Jhangiani,S.N., Joshi,V., Kovar,C.L., Lewis,L.R., Liu,Y.S., Lopez,J., Morgan,M.B., Nguyen,N.B., Okwuonu,G.O., Ruiz,S.J., Santibanez,J., Wright,R.A., Buhay,C., Ding,Y., Dugan-Rocha,S., Herdandez,J., Holder,M., Sabo,A., Egan,A., Goodell,J., Wilczek-Boney,K., Fowler,G.R., Hitchens,M.E., Lozado,R.J., Moen,C., Steffen,D., Warren,J.T., Zhang,J., Chiu,R., Schein,J.E., Durbin,K.J., Havlak,P., Jiang,H., Liu,Y., Qin,X., Ren,Y., Shen,Y., Song,H., Bell,S.N., Davis,C., Johnson,A.J., Lee,S., Nazareth,L.V., Patel,B.M., Pu,L.L., Vattathil,S., Williams,R.L. Jr., Curry,S., Hamilton,C., Sodergren,E., Wheeler,D.A., Barris,W., Bennett,G.L., Eggen,A., Green,R.D., Harhay,G.P., Hobbs,M., Jann,O., Keele,J.W., Kent,M.P., Lien,S., McKay,S.D., McWilliam,S., Ratnakumar,A., Schnabel,R.D., Smith,T., Snelling,W.M., Sonstegard,T.S., Stone,R.T., Sugimoto,Y., Takasuga,A., Taylor,J.F., Van Tassell,C.P., Macneil,M.D., Abatepaulo,A.R., Abbey,C.A., Ahola,V., Almeida,I.G., Amadio,A.F., Anatriello,E., Bahadue,S.M., Biase,F.H., Boldt,C.R., Carroll,J.A., Carvalho,W.A., Cervelatti,E.P., Chacko,E., Chapin,J.E., Cheng,Y., Choi,J., Colley,A.J., de Campos,T.A., De Donato,M., Santos,I.K., de Oliveira,C.J., Deobald,H., Devinoy,E., Donohue,K.E., Dovc,P., Eberlein,A., Fitzsimmons,C.J., Franzin,A.M., Garcia,G.R., Genini,S., Gladney,C.J., Grant,J.R., Greaser,M.L., Green,J.A., Hadsell,D.L., Hakimov,H.A., Halgren,R., Harrow,J.L., Hart,E.A., Hastings,N., Hernandez,M., Hu,Z.L., Ingham,A., Iso-Touru,T., Jamis,C., Jensen,K., Kapetis,D., Kerr,T., Khalil,S.S., Khatib,H., Kolbehdari,D., Kumar,C.G., Kumar,D., Leach,R., Lee,J.C., Li,C., Logan,K.M., Malinverni,R., Marques,E., Martin,W.F., Martins,N.F., Maruyama,S.R., Mazza,R., McLean,K.L., Medrano,J.F., Moreno,B.T., More,D.D., Muntean,C.T., Nandakumar,H.P., Nogueira,M.F., Olsaker,I., Pant,S.D., Panzitta,F., Pastor,R.C., Poli,M.A., Poslusny,N., Rachagani,S., Ranganathan,S., Razpet,A., Riggs,P.K., Rincon,G., Rodriguez-Osorio,N., Rodriguez-Zas,S.L., Romero,N.E., Rosenwald,A., Sando,L., Schmutz,S.M., Shen,L., Sherman,L., Southey,B.R., Lutzow,Y.S., Sweedler,J.V., Tammen,I., Telugu,B.P., Urbanski,J.M., Utsunomiya,Y.T., Verschoor,C.P., Waardenberg,A.J., Wang,Z., Ward,R., Weikard,R., Welsh,T.H. Jr., White,S.N., Wilming,L.G., Wunderlich,K.R., Yang,J., Zhao,F.Q.Reference: Bovine genome assembly by Cattle Genome Sequencing International Consortium : Unpublished – show 15 authorshide authorsMurali,S.C., Liu,Y., Qin,X., Wang,M., Skinner,E., Vee,V., Smith,T., Schwartz,D.C., Zhou,S., English,A., Han,Y., Doddapaneni,H.V., Muzny,D., Gibbs,R.A., Worley,K.C.Submission: Submitted (28-SEP-2004) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA – Bovine Sequencing ConsortiumSubmission: Submitted (09-NOV-2015) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA – show 15 authorshide authorsMurali,S.C., Liu,Y., Qin,X., Wang,M., Skinner,E., Vee,V., Smith,T., Schwartz,D.C., Zhou,S., English,A., Han,Y., Doddapaneni,H.V., Muzny,D., Gibbs,R.A., Worley,K.C.On Nov 13, 2015 this sequence version replaced gi:927976315.
The Bos taurus whole genome shotgun (WGS) project has the project accession AAFC00000000. This version of the project (05) has the accession number AAFC05000000, and consists of sequences AAFC05000001-AAFC05042250.
##Genome-Assembly-Data-START## Assembly Date : JUN-2015 Assembly Method : UMD Overlapper v. 2009; additional processing + PBJelly2 v. 14.9.9 Assembly Name : Btau_5.0.1 Genome Coverage : 19.0x Sequencing Technology : Sanger; PacBio RS II ##Genome-Assembly-Data-END## - Contigs
- Download
- GenBank:AAFC05.1.gbff.gz 222.5 Mb
AAFC05.2.gbff.gz 221.9 Mb
AAFC05.3.gbff.gz 222.8 Mb
AAFC05.4.gbff.gz 222.1 Mb
AAFC05.5.gbff.gz 221.7 Mb
AAFC05.6.gbff.gz 77.4 MbFASTA:AAFC05.1.fsa_nt.gz 153.4 Mb
AAFC05.2.fsa_nt.gz 153.3 Mb
AAFC05.3.fsa_nt.gz 152.9 Mb
AAFC05.4.fsa_nt.gz 153.4 Mb
AAFC05.5.fsa_nt.gz 153.3 Mb
AAFC05.6.fsa_nt.gz 53 MbASN.1:AAFC05.1.bbs.gz 114.1 Mb
AAFC05.2.bbs.gz 113.8 Mb
AAFC05.3.bbs.gz 113.3 Mb
AAFC05.4.bbs.gz 114.3 Mb
AAFC05.5.bbs.gz 114.1 Mb
AAFC05.6.bbs.gz 39.3 Mb - History
Minor Version Create Date 1 11/13/2015 5 08/09/2024