Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Gracilinema caldarium)

Gracilinema caldarium

Taxonomy ID: 215591 (for references in articles please use NCBI:txid215591)
current name
Gracilinema caldarium (Pohlschröder et al. 1995) Brune et al. 2022 in [Brune A et al. (2022)]
basionym:
Spirochaeta caldaria corrig. Pohlschröder et al. 1995 in [Validation List No. 55 (1995)]
type strain of Spirochaeta caldaria corrig.: personal::H1, ATCC:51460, DSM:7334
homotypic synonym:
"Spirochaeta caldarium" Pohlschröder et al. 1994, effective name, orth. var. in [Pohlschröder M et al. (1994)]
homotypic synonym:
Treponema caldarium corrig. (Pohlschröder et al. 1995) Abt et al. 2013 in [Validation List No. 153 (2013)]
homotypic synonym:
"Treponema caldaria" (Pohlschröder et al. 1995) Abt et al. 2013, effective name, orth. var. in [Abt B et al. (2013)]
NCBI BLAST name: spirochetes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Breznakiellaceae; Gracilinema
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 304 299 7
Protein 10,802 8,011 -
Genome 1 1 -
GEO Datasets 3 - -
PubMed Central 4 3 -
Gene 2,930 1 -
SRA Experiments 6 2 -
Protein Clusters 1,549 1,549 -
Identical Protein Groups 8,282 8,012 -
BioProject 4 2 -
BioSample 7 4 2
Assembly 4 3 -
Taxonomy 2 1 -

Comments and References:
Brune A et al. (2022), PubMed: abstract
Brune, A., Song, Y., Oren, A., and Paster, B.J. "A new family for 'termite gut treponemes': description of Breznakiellaceae fam. nov., Gracilinema caldarium gen. nov., comb. nov., Leadbettera azotonutricia gen. nov., comb. nov., Helmutkoenigia isoptericolens gen. nov., comb. nov., and Zuelzera stenostrepta gen. nov., comb. nov., and proposal of Rectinemataceae fam. nov." Int. J. Syst. Evol. Microbiol. (2022) 72(5):005439.
Validation List No. 55 (1995)
VALIDATION LIST No. 55. Int. J. Syst. Bacteriol. (1995) 45(4):879-880.
Pohlschröder M et al. (1994)
Pohlschröder, M., Leschine, S.B., and Canale-Parola, E. "Spirochaeta caldaria sp. nov., a thermophilic bacterium that enhances cellulose degradation by Clostridium thermocellum." Arch. Microbiol. (1994) 161(1):17-24. [No PubMed record available.]
Validation List No. 153 (2013)
Validation List No. 153: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2013) 63(9):3131-3134.
Abt B et al. (2013), doi: 10.4056/sigs.3096473, PubMed: abstract
Abt, B., Göker, M., Scheuner, C., Han, C., Lu, M., Misra, M., Lapidus, A., Nolan, M., Lucas, S., Hammon, N., Deshpande, S., Cheng, J.-F., Tapia, R., Goodwin, L.A., Pitluck, S., Liolios, K., Pagani, I., Ivanova, N., Mavromatis, K., Mikhailova, N., Huntemann, M., Pati, A., Chen, A., Palaniappan, K., Land, M., Hauser, L, Jeffries, C.D., Rohde, M., Spring, S., Gronow, S., Detter, J.C., Bristow, J., Eisen, J.A., Markowitz, V., Hugenholtz, P., Kyrpides, N.C., Woyke, T., Klenk, H.-P. "Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema." Stand. Genomic Sci. (2013) 8(1):88-105.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Treponema caldarium meta-databases BacDive
Spirochaeta caldaria Pohlschroeder et al. 1995 taxonomy/phylogenetic Encyclopedia of life
Spirochaeta caldaria culture/stock collections Global Catalogue of Microorganisms
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]