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Taxonomy browser (Cryptococcus neoformans var. grubii)

Cryptococcus neoformans var. grubii

Taxonomy ID: 178876 (for references in articles please use NCBI:txid178876)
current name
Cryptococcus neoformans var. grubii Franzot et al., 1999
type material of Cryptococcus neoformans var. grubii: CBS:8710, NYSD:1649
includes:
Cryptococcus neoformans A
Cryptococcus neoformans serotype A
Filobasidiella neoformans serotype A
NCBI BLAST name: basidiomycete fungi
Rank: varietas
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 4 (Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma)
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 32,088 18,023 -
Protein 302,598 106,367 -
Structure 65 2 -
Genome 1 1 -
Popset 108 108 -
GEO Datasets 2,097 1,359 -
Gene 8,379 40 -
SRA Experiments 4,897 3,050 -
Identical Protein Groups 81,039 41,153 -
BioProject 410 82 -
BioSample 4,712 2,998 965
Assembly 91 61 -
PubChem BioAssay 104 71 -
Taxonomy 261 1 -

Comments and References:

Diaz et al. 2000
Diaz, M.R., Boekhout, T., Theelen, B., and Fell, J.A. 2000. Molecular sequences analyses of the intergenic spacer (IGS) associated with rDNA of the two pathogenic varieties of the pathogenic yeast, Cryptococcus neoformans. System. Appl. Microbiol. 23: 535-545.
Boekhout et al. 2001
Boekhout, T. et al. 2001. Hybrid genotypes in the pathogenic yeast Cryptococcus neoformans. Microbiology 147: 891-907.
Kwon-Chung et al. (2017), doi:10.1128/mSphere.00357-16
Kwon-Chung K.J. et al. 2017. The Case for Adopting the “Species Complex” Nomenclature for the Etiologic Agents of Cryptococcosis. mSphere.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
dryaddb supplemental materials Dryad Digital Repository
GOLD: 6 Organisms organism-specific Genomes On Line Database
Cryptococcus neoformans var. grubii culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Cryptococcus neoformans var. grubii Franzot, Salkin & Casadevall 1999 taxonomy/phylogenetic Index Fungorum
Cryptococcus neoformans var. grubii Franzot et al. taxonomy/phylogenetic MycoBank
fungal-I (genome proposal) taxonomy/phylogenetic NHGRI genome proposal white papers
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
16 records from provider organism-specific diArk - a resource for eukaryotic genome research
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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