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Taxonomy browser (Pedobacter)

Pedobacter

Taxonomy ID: 84567 (for references in articles please use NCBI:txid84567)
current name
Pedobacter Steyn et al. 1998 emend. Du et al. 2015
homotypic synonym:
Pedobacter Steyn et al. 1998 emend. Vanparys et al. 2005
Pedobacter Steyn et al. 1998 emend. Gallego et al. 2006
Pedobacter Steyn et al. 1998 emend. Hwang et al. 2006
Pedobacter Steyn et al. 1998 emend. Zhou et al. 2012
Pedobacter Steyn et al. 1998 emend. Farfan et al. 2014
Pedobacter Steyn et al. 1998 emend. Kook et al. 2014
NCBI BLAST name: CFB group bacteria
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 50,563 12
Protein 1,380,361 18,674
Structure 28 -
Genome 79 1
Popset 339 338
GEO Datasets 11 -
PubMed Central 1,786 1,361
Gene 24,291 -
SRA Experiments 330 23
Protein Clusters 5,445 99
Identical Protein Groups 1,096,021 18,674
BioProject 246 8
BioSample 602 31
Assembly 326 -
Taxonomy 801 1

Comments and References:

Pedobacter (LPSN link)
Gallego V et al. (2006c)
Gallego, V., Garcia, M.T., and Ventosa, A. "Pedobacter aquatilis, isolated from drinking water, and emended description of the genus Pedobacter." Int. J. Syst. Evol. Microbiol. (2006) 56:1853-1858.
Du J et al. (2015b)
Du, J., Singh, H., Ngo, H.T.T., Won, K.-H., Kim, K.-Y., and Yi, T.-H. "Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov., isolated from an ancient tree trunk, and emended description of the genus Pedobacter." Int. J. Syst. Evol. Microbiol. (2015) 65:1241-1246.
Farfan M et al. (2014)
Farfan, M., Montes, M.J., and Marques, A.M. "Reclassification of Sphingobacterium antarcticum Shivaji et al. 1992 as Pedobacter antarcticus comb. nov. and Pedobacter piscium (Takeuchi and Yokota 1993) Steyn et al. 1998 as a later heterotypic synonym of Pedobacter antarcticus." Int. J. Syst. Evol. Microbiol. (2014) 64:863-868.
Hwang CY et al. (2006)
Hwang, C.Y., Choi, D.H., and Cho, B.C. "Pedobacter roseus sp. nov., isolated from a hypertrophic pond, and emended description of the genus Pedobacter." Int. J. Syst. Evol. Microbiol. (2006) 56:1831-1836.
Kook M et al. (2014b)
Kook, M., Park, Y., and Yi, T.-H. "Pedobacter jejuensis sp. nov., isolated from soil of a pine grove, and emended description of the genus Pedobacter." Int. J. Syst. Evol. Microbiol. (2014) 64:1789-1794.
Steyn PL et al. (1998)
Steyn, P.L., Segers, P., Vancanneyt, M., Sandra, P., Kersters, K., and Joubert, J.J. "Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. proposal of the family Sphingobacteriaceae fam. nov." Int. J. Syst. Bacteriol. (1998) 48:165-177.
Vanparys B et al. (2005)
Vanparys, B., Heylen, K., Lebbe, L., and De Vos, P. "Pedobacter caeni sp. nov., a novel species isolated from a nitrifying inoculum." Int. J. Syst. Evol. Microbiol. (2005) 55:1315-1318. Published online 14 January 2005. doi:10.1099/ijs.0.63635-0
Wei Y et al. (2018)
Wei, Y., Wang, B., Zhang, L., Zhang, J., and Chen, S. "Pedobacter yulinensis sp. nov., isolated from sandy soil, and emended description of the genus Pedobacter." Int. J. Syst. Evol. Microbiol. (2018) 68(8):2523-2529.
Zhou Z et al. (2012b)
Zhou, Z., Jiang, F., Wang, S., Peng, F., Dai, J., Li, W., and Fang, C. "Pedobacter arcticus sp. nov., a facultative psychrophile isolated from Arctic soil and emended descriptions of the genus Pedobacter, Pedobacter heparinus, Pedobacter daechungensis, Pedobacter terricola, Pedobacter glucosidilyticus and Pedobacter lentus." Int. J. Syst. Evol. Microbiol. (2012) 62:1963-1969.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pedobacter taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
5 records from this provider organism-specific Integrated Microbial Genomes
Pedobacter taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
Pedobacter taxonomy/phylogenetic Ocean Biogeographic Information System
Pedobacter | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Pedobacter taxonomy/phylogenetic World Register of Marine Species
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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