Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Pseudomonas amygdali)

Pseudomonas amygdali

Taxonomy ID: 47877 (for references in articles please use NCBI:txid47877)
current name
Pseudomonas amygdali Psallidas and Panagopoulos 1975
type strain of Pseudomonas amygdali: ATCC:33614, CCUG:32770, CFBP:3205, CIP:106734, DSM:7298, ICMP:3918, BCCM/LMG:13184, BCCM/LMG:2123, NCPPB:2607
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 2
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 63,314 2,026 1,591
Protein 609,448 78,117 -
Structure 2 - -
Genome 1 1 -
Popset 82 68 -
GEO Datasets 8 - -
PubMed Central 64 61 -
Gene 12,298 1 -
SRA Experiments 43 2 -
Protein Clusters 4,571 4,571 -
Identical Protein Groups 177,091 71,276 -
BioProject 56 7 -
BioSample 139 9 4
Assembly 125 9 -
PubChem BioAssay 12 - -
Taxonomy 26 1 -

Comments and References:

P. ficuserectae = P. amygdali = P. meliae = P. savastanoi
From the LPSN web site: "Pseudomonas ficuserectae Goto 1983, Pseudomonas amygdali Psallidas and Panagopoulos 1975 (Approved Lists 1980), Pseudomonas meliae Ogimi 1981, and Pseudomonas savastanoi (Janse 1982) Gardan et al. 1992 are members of a single genomospecies. Thus, these species should be considered synonymous and the correct name for this species should be Pseudomonas amygdali. Unfortunately, Pseudomonas amygdali, as delineated by DNA-DNA hybridization, could not be differentiated from other genomospecies by phenotypic tests. So the authors [Gardan et al. 1999] do not formally propose nomenclatural changes." [N.B.: See also Gomila M et al. (2017).]
Gardan L et al. (1999)
Gardan, L., Shafik, H., Belouin, S., Broch, R., Grimont, F., and Grimont, P.A.D. "DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. nov. and Pseudomonas cannabina sp. nov. (ex Sutic and Dowson 1959)." Int. J. Syst. Bacteriol. (1999) 49:469-478. [N.B.: Gardan et al. claim strains CFBP 1660 (pathotype of P. syringae pv. primulae) and CFBP 2348 (pathotype of P. syringae pv. ribicola) are misidentified and should be transferred to Pseudomonas viridiflava.]
Gomila M et al. (2017b), other link:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5725466/
Gomila, M., Busquets, A., Mulet, M., García-Valdés, E., and Lalucat, J. "Clarification of taxonomic status within the Pseudomonas syringae species group based on a phylogenomic analysis." Front. Microbiol. (2017) 8:2422.
Psallidas PG & Panagopoulos CG (1975)
Psallidas, P.G., and Panagopoulos C.G. "A new bacteriosis of almond caused by Pseudomonas amygdali sp. nov." Annales de l'Institut Phytopathologique Benaki N.S. (1975) 11:94-108. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pseudomonas amygdali meta-databases BacDive
Pseudomonas amygdali Psallidas and Panagopoulos 1975 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0116223 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Pseudomonas amygdali culture/stock collections Global Catalogue of Microorganisms
18 records from this provider organism-specific Integrated Microbial Genomes
Pseudomonas amygdali taxonomy/phylogenetic Lifemap
Pseudomonas amygdali | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Pseudomonas amygdali taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]