Taxonomy browser (Janthinobacterium lividum)

type strain of Janthinobacterium lividum: ATCC :12473, CCUG :2344, CIP:103349, DSM :1522, HAMBI:1919, JCM :9043, BCCM/LMG :2892, NCTC :9796, VKM :B-1223, NCIMB:9130

includes:

Janthinobacterium sp. ERGS5:01

Janthinobacterium sp. HSC-3S05

Janthinobacterium sp. PLB02

Janthinobacterium sp. SLB01

NCBI BLAST name: b-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Bacillus violaceus berolinensis" Kruse 1896, effective name⁶⁾

heterotypic synonym

"Bacillus berolinensis" Chester 1901, effective name⁷⁾

heterotypic synonym

"Chromobacterium amethystinum" Breed et al. 1957, effective name⁸⁾

heterotypic synonym

Pseudomonas mephitica Claydon and Hammer 1939 (Approved Lists 1980)

type strain of Pseudomonas mephitica: ATCC :33665, CCUG :2513

Lineage( full ): cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	2,911	2,862	316
Protein	136,305	136,305	-
Genome	1	1	-
Popset	53	53	-
PubMed Central	387	387	-
Gene	11,773	11,773	-
SRA Experiments	81	80	-
Protein Clusters	2,870	2,870	-
Identical Protein Groups	82,774	82,774	-
BioProject	33	32	-
BioSample	93	92	4
Assembly	29	27	-
PubChem BioAssay	1	1	-
Taxonomy	2	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
7) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
8) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Chester FD (1897)

Chester, F.D. "Report of the mycologist: bacteriological work." Delaware Agricultural Experiment Station Bulletin [Del. Agr. Exp. Sta. Bull.] (1897) 9:38-145. [No PubMed record available.]

Chester FD (1901)

Chester, F.D. A manual of determinative bacteriology. The Macmillan Co., New York, (1901) pp. 1-401. [No PubMed record available.]

Chernogor L et al. (2023), doi:10.3390/pathogens12010008

Chernogor, L., Eliseikina, M., Petrushin, I., Chernogor, E., Khanaev, I., and Belikov, S.I. "Janthinobacterium sp. strain SLB01 as pathogenic bacteria for sponge Lubomirskia baikalensis." Pathogens (2023) 12(1):8.

De Ley J et al. (1978)

De Ley, J., Segers, P., Gillis, M. "Intra- and intergeneric similarities of Chromobacterium and Janthinobacterium ribosomal ribonucleic acid cistrons." Int. J. Syst. Bacteriol. (1978) 28:154-168. [No PubMed record available.]

Hill LR et al. (1984) (reference relating to orthographic revision)

Hill, L.R., Skerman, V.B.D., and Sneath, P.H.A. "Corrigenda to the Approved Lists of Bacterial Names edited for the International Committee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1984) 34(4):508-511. [No PubMed record available.]

Kampfer P et al. (2008)

Kampfer, P., Falsen, E., and Busse, H-J. "Reclassification of Pseudomonas mephitica Claydon and Hammer 1939 as a later heterotypic synonym of Janthinobacterium lividum (Eisenberg 1891) De Ley et al. 1978." Int. J. Syst. Evol. Microbiol. (2008) 58:136-138.

Kruse W (1896b)

Kruse, W. "Systematik der Streptothricheen und Bakterien.: In: Flugge, C. (ed.), Die Mikroorganismen, 3 Aufl. (1896) 2:48-66,67-96,185-526. [No PubMed record available.]

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Anzai Y et al. (2000)

Anzai, Y., Kim, H., Park, J.Y., Wakabayashi, H., and Oyaizu, H. "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence." Int. J. Syst. Evol. Microbiol. (2000) 50:1563-1589.

Bergey DH et al. (1923)

Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 1st ed. (1923) The Williams and Wilkins Co., Baltimore, pp. 1-442. [No PubMed record available.]

Petrushin IS et al. (2019)

Petrushin, I.S., Belikov, S.I., and Chernogor, L.I. "Draft genome sequence of Janthinobacterium sp. strain SLB01, isolated from the diseased sponge Lubomirskia baicalensis." Microbiol. Resour. Announc. (2019) 8:e01108-19.

Breed RS et al. (1957)

Breed, R.S., Murray, E.G.D., and Smith, N.R. (eds.): Bergey's Manual of Determinative Bacteriology, seventh edition, The Williams & Wilkins Co, Baltimore (1957). p. 394. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Janthinobacterium lividum	meta-databases	BacDive
GOLD: 11 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Janthinobacterium lividum	culture/stock collections	Global Catalogue of Microorganisms
11 records from this provider	organism-specific	Integrated Microbial Genomes
Chromobacterium amethystinum	taxonomy/phylogenetic	Integrated Taxonomic Information System
Janthinobacterium lividum (T) \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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