Taxonomy browser (Treponema denticola)

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Taxonomy browser (Treponema denticola)

Treponema denticola

Taxonomy ID: 158 (for references in articles please use NCBI:txid158)

current name

Treponema denticola (ex Flugge 1886) Chan et al. 1993

type strain of Treponema denticola: ATCC :35405, CIP:103919, DSM :14222, JCM :8153

homotypic synonym:

"Spirochaete denticola" Flügge 1886, effective name¹⁾

Treponema denticola (ex Brumpt 1925) Chan et al. 1993

includes:

Treponema sp. ATCC 700768

Treponema sp. OMZ 830

NCBI BLAST name: spirochetes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Spirochaete dentium" Miller 1889, effective name²⁾

heterotypic synonym

"Spirillum dentium" (Miller 1889) Sternberg 1892, effective name³⁾

heterotypic synonym

"Spirochaeta dentium" (Miller 1889) Migula 1895, effective name⁴⁾

heterotypic synonym

"Spironema dentium" (Miller 1889) Gross 1912, effective name⁵⁾

heterotypic synonym

"Treponema dentium" (Miller 1889) Dobell 1912, effective name⁶⁾

heterotypic synonym

"Treponema microdentium" Noguchi 1912, effective name⁷⁾

heterotypic synonym

"Spirochaeta orthodonta" Hoffmann 1920, effective name⁸⁾

heterotypic synonym

"Spirochaeta microdentium" (Noguchi 1912) Heim 1922, effective name⁹⁾

heterotypic synonym

"Treponema dentium-stenogyratum" Pettit 1928, effective name¹⁰⁾

heterotypic synonym

"Treponema orthodontum" (Hoffmann 1920) Noguchi 1928, effective name¹¹⁾

heterotypic synonym

"Spirochaeta ambigua" Seguin and Vinzent 1936, effective name¹²⁾

heterotypic synonym

"Spirochaeta comandonii" Seguin and Vinzent 1936, effective name¹³⁾

heterotypic synonym

"Treponema ambiguum" (Seguin and Vinzent 1936) Prevot 1940, effective name¹⁴⁾

heterotypic synonym

"Treponema comandonii" (Seguin and Vinzent 1936) Prevot 1940, effective name¹⁵⁾

Lineage( full ): cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	5,184	4,369	28
Protein	127,099	78,308	-
Structure	32	14	-
Genome	1	1	-
Popset	30	30	-
Conserved Domains	3	3	-
GEO Datasets	123	108	-
PubMed Central	4,479	4,479	-
Gene	2,960	3	-
SRA Experiments	70	25	-
Protein Clusters	2,985	2,985	-
Identical Protein Groups	50,390	45,385	-
BioProject	45	24	-
BioSample	211	174	19
Assembly	40	23	-
PubChem BioAssay	7	7	-
Taxonomy	19	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
7) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
8) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
9) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
10) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
11) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
12) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
13) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
14) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
15) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

genome sequence

Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Chan EC et al. (1993)

Chan, E.C., Siboo, R., Keng, T., Psarra, N., Hurley, R., Cheng, S.L., and Iugovaz, I. "Treponema denticola (ex Brumpt 1925) sp. nov., nom. rev., and identification of new spirochete isolates from periodontal pockets." Int. J. Syst. Bacteriol. (1993) 43:196-203.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Treponema denticola	meta-databases	BacDive
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Treponema denticola	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
13 records from this provider	organism-specific	Integrated Microbial Genomes
Spirochaeta dentium	taxonomy/phylogenetic	Integrated Taxonomic Information System
Treponema denticola \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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