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Taxonomy browser (Pectobacterium odoriferum)

Pectobacterium odoriferum

Taxonomy ID: 78398 (for references in articles please use NCBI:txid78398)
current name
Pectobacterium odoriferum (Gallois et al. 1992) Portier et al. 2019
basionym:
Erwinia carotovora subsp. odorifera Gallois et al. 1992
type strain of Erwinia carotovora subsp. odorifera: CFBP:1878, CIP:103762, ICMP:11533, NCPPB:3839, BCCM/LMG:17566, BCCM/LMG:5863
homotypic synonym:
Erwinia carotovora subsp. odoriferum, orth. var. 1)
Pectobacterium carotovorum subsp. odoriferum (Gallois et al. 1992) Hauben et al. 1999
Pectobacterium carotovorum subsp. odoriferum (Gallois et al. 1992) Hauben et al. 1999 emend. Gardan et al. 2003
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium
   Entrez records   
Database name Direct links Links from type
Nucleotide 3,299 348
Protein 88,307 -
Genome 1 -
Popset 68 -
PubMed Central 22 -
Gene 4,753 -
SRA Experiments 33 -
Identical Protein Groups 24,822 -
BioProject 22 -
BioSample 55 2
Assembly 19 1
Taxonomy 1 -

Notes:

Comments and References:

Gallois A et al. (1992)
Gallois, A., Samson, R., Agerone, E., and Grimont, P.A.D. "Erwinia carotovora subsp. odorifera subsp. nov., associated with odorous soft rot of chicory (Cichorium intybus L.)." Int. J. Syst. Bacteriol. (1992) 42:582-588. [No PubMed record available.]
Gardan L et al. (2003)
Gardan, L., Gouy, C., Christen, R., and Samson, R. "Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov." Int. J. Syst. Evol. Microbiol. (2003) 53:449-454.
Hauben L et al. (1998)
Hauben, L., Moore, E.R.B., Vauterin, L., Steenackers, M., Mergaert, J., Verdonck, L., and Swings, J. "Phylogenetic position of phytopathogens within the Enterobacteriaceae." Syst. Appl. Microbiol. (1998) 21:384-397.
Portier P et al. (2019)
Portier, P., Pédron, J., Taghouti, G., Fischer-Le Saux, M., Caullireau, E., Bertrand, C., Laurent, A., Chawki, K., Oulgazi, S., Moumni, M., Andrivon, D., Dutrieux, C., Faure, D., Hélias, V., and Barny, M.A. "Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants." Int. J. Syst. Evol. Microbiol. (2019) 69(10):3207-3216.
VALIDATION LIST No. 68 (1999) (Pectobacterium carotovorum subsp. odoriferum)
VALIDATION LIST No. 68. Int. J. Syst. Bacteriol. (1999) 49:1-3.
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]
Zhang Y et al. (2016d)
Zhang, Y., Fan, Q., and Loria, R. "A re-evaluation of the taxonomy of phytopathogenic genera Dickeya and Pectobacterium using whole-genome sequencing data." Syst. Appl. Microbiol. (2016) 39:252-259. [N.B.: authors suggest elevation of Pectobacterium carotovorum subspp. to species rank.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider organism-specific BioCyc
Pectobacterium carotovorum subsp. odoriferum (Gallois et al. 1992) Hauben et al., 1999 taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Pectobacterium carotovorum subsp. odoriferum culture/stock collections Global Catalogue of Microorganisms
14 records from provider organism-specific Integrated Microbial Genomes
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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