Taxonomy browser (Streptomyces californicus)

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Taxonomy browser (Streptomyces californicus)

Streptomyces californicus

Taxonomy ID: 67351 (for references in articles please use NCBI:txid67351)

current name

Streptomyces californicus (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980)

type strain of Streptomyces californicus: CGMCC :4.0570, ATCC :19734, ATCC :3312, CBS :125.20, CBS :354.53, CBS :473.68, BCRC :13688, DSM :40058, HUT:6049, IFM:1070, IFO :12750, NBRC :12750, IFO :3386, NBRC :3386, IMET:40261, JCM :4015, JCM :4567, BCCM/LMG :19309, NRRL :B-1221, NRRL :B-2098, NRRL :ISP-5058, RIA:1015, VKM:Ac-575, ISP:5058, NCAIM:B.01475

homotypic synonym:

"Actinomyces californicus" Waksman and Curtis 1916, effective name¹⁾

Streptomyces californicus (Waksman and Curtis 1916) Waksman and Henrici 1948 emend. Nouioui et al. 2018, emended name²⁾ in [Nouioui I et al. (2018c)]

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

Streptomyces floridae Bartz et al. 1951

type strain of Streptomyces floridae: CGMCC :4.1972, DSM :40938, IFO :15405, NBRC :15405, JCM :5068, NCIMB:12830, NRRL :2423

homotypic synonym:

Streptomyces floridae Bartz et al. 1951 emend. Nouioui et al. 2018, emended name²⁾ in [Nouioui I et al. (2018c)]

equivalent:

Streptomyces floridensis

heterotypic synonym

Streptomyces puniceus Patelski 1951

type strain of Streptomyces puniceus: ATCC :19801, CBS :308.55, CBS :553.68, BCRC :12097, DSM :40083, IFO :12811, NBRC :12811, JCM :4406, NRRL :B-2895, NRRL :ISP-5083, RIA:1080, UNIQEM:187, VKM:Ac-579, ISP:5083

homotypic synonym:

Streptomyces puniceus Finlay and Sobin {in ATCC catalog}

Lineage( full ): cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces

Entrez records
Database name	Direct links	Links from type
Nucleotide	10,102	6,698
Protein	54,257	-
Genome	1	-
Popset	40	-
PubMed Central	82	-
Gene	13,977	-
SRA Experiments	10	-
Identical Protein Groups	32,491	-
BioProject	5	-
BioSample	16	8
Assembly	16	2
Taxonomy	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.

Comments and References:

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract

Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

Bartz QR et al. (1951)

Bartz, Q.R., Ehrlich, J., Mold, J.D., Penner, M.A., and Smith, R. M. "Viomycin, a new tuberculostatic antibiotic." Am. Rev. Tuberc. (1951) 63:4-6. [No PubMed record available.]

Shirling EB & Gottlieb D (1968)

Shirling, E.B., and Gottlieb, D. "Cooperative description of type cultures of Streptomyces. II. Species descriptions from first study." Int. J. Syst. Bacteriol. (1968) 18(2):69-189. [No PubMed record available.]

Trüper HG (1999) (reference relating to proposed orthographic revision)

Trüper, H.G. "How to name a prokaryote? Etymological considerations, proposals and practical advice in prokaryote nomenclature." FEMS Microbiol. Rev. (1999) 23:231-249. [No abstract available.]

Trüper HG (1996) (reference relating to proposed orthographic revision)

Trüper, H.G. "Help! Latin! How to avoid the most common mistakes while giving Latin names to newly discovered prokaryotes." Microbiologia (Sociedad Espanola de Microbiologia) (1996) 12:473-475. [No abstract record available.]

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Waksman SA & Curtis R (1916)

Waksman, S.A., and Curtis, R. "The Actinomyces of the soil." Soil Sci. (1916) 1:99-134. [No PubMed record available.]

Rong X & Huang Y (2010)

Rong, X., and Huang, Y. "Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA-DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species." Int. J. Syst. Evol. Microbiol. (2010) 60:696-703. [N.B.: the authors incorrectly state that Streptomyces californicus is a later heterotypic synonym of Streptomyces puniceus. In fact, the reverse is true.]

Finlay AC & Sobin BA (1952)

Finlay, A.C., and Sobin, B.A. "Verfahren zur Herstellung eines Antibiotikums." German Pat. 834582, 1952.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Streptomyces puniceus	meta-databases	BacDive
Streptomyces puniceus Patelski 1951 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
GOLD Multi-Isolate Organism: Go0353720	organism-specific	Genomes On Line Database
Streptomyces puniceus	culture/stock collections	Global Catalogue of Microorganisms
8 records from provider	organism-specific	Integrated Microbial Genomes

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov