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Taxonomy browser (Faecalibacterium duncaniae)

Faecalibacterium duncaniae

Taxonomy ID: 411483 (for references in articles please use NCBI:txid411483)
current name
Faecalibacterium duncaniae Sakamoto et al. 2022 in [Sakamoto M et al. (2022)]
type strain of Faecalibacterium duncaniae: personal::A2-165, JCM:31915, DSM:17677
homotypic synonym:
Faecalibacterium duncaniae Sakamoto et al. 2022 emend. Sakamoto et al. 2023, emended name 1) in [Sakamoto M et al. (2023)]
includes:
Faecalibacterium prausnitzii A2-165
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Faecalibacterium hominis Liu et al. 2023 non Afrizal et al. 2022 Liu et al. 2023 in [Validation List No. 210 (2023)]
type strain of Faecalibacterium hominis Liu et al. 2023 non Afrizal et al. 2022: personal::4P-15, CGMCC:1.5250, NBRC:113913
not considered type of Faecalibacterium hominis Liu et al. 2023 non Afrizal et al. 2022: CGMCC:1.52500
homotypic synonym:
"Faecalibacterium hominis" Liu et al. 2022, effective name 2) in [Liu C et al. (2021), Liu C et al. (2022)]
includes:
Faecalibacterium sp. 4P15
Faecalibacterium sp. 4P_15
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
   Entrez records   
Database name Direct links Links from type
Nucleotide 834 245
Protein 21,054 -
Structure 2 -
Genome 1 -
PubMed Central 16 -
Gene 3,164 -
SRA Experiments 44 -
Identical Protein Groups 15,110 -
BioProject 9 -
BioSample 109 41
Assembly 11 3
Taxonomy 1 -

Notes:

Comments and References:

Sakamoto M et al. (2022), PubMed: abstract
Sakamoto, M., Sakurai, N., Tanno, H., Iino, T., Ohkuma, M., and Endo, A. "Genome-based, phenotypic and chemotaxonomic classification of Faecalibacterium strains: proposal of three novel species Faecalibacterium duncaniae sp. nov., Faecalibacterium hattorii sp. nov. and Faecalibacterium gallinarum sp. nov." Int. J. Syst. Evol. Microbiol. (2022) 72(4):005379.
Sakamoto M et al. (2023), PubMed: abstract
Sakamoto, M., Sakurai, N., Tanno, H., Iino, T., Ohkuma, M., and Endo, A. "Faecalibacterium hominis Liu et al. 2023 is a later heterotypic synonym of Faecalibacterium duncaniae Sakamoto et al. 2022." Int. J. Syst. Evol. Microbiol. (2023) 73(8):005995.
Validation List No. 210 (2023), PubMed: abstract
Validation List no. 210. "Valid publication of new names and new combinations effectively published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2023) 73(3):005812.
Liu C et al. (2021), doi: 10.1186/s40168-021-01064-3, PubMed: abstract
Liu, C., Du, M.-X., Abuduaini, R., Yu, H.-Y., Li, D.-H., Wang, Y.-J., Zhou, N., Jiang, M.-Z., Niu, P.-X., Han, S.-S., Chen, H.-H., Shi, W.-Y., Wu, L., Xin, Y.-H., Ma, J., Zhou, Y., Jiang, C.-Y., Liu, H.-W., and Liu, S.-J. "Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank." Microbiome (2021) 9(1):119.
Liu C et al. (2022), doi: 10.1186/s40168-022-01370-4, PubMed: abstract
Liu, C., Du, M.-X., Abuduaini, R., Yu, H.-Y., Li, D.-H., Wang, Y.-J., Zhou, N., Jiang, M.-Z., Niu, P.-X., Han, S.-S., Chen, H.-H., Shi, W.-Y., Wu, L., Xin, Y.-H., Ma, J., Zhou, Y., Jiang, C.-Y., Liu, H.-W., and Liu, S.-J. "Correction: Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank." Microbiome (2022) 10(1):163.
Afrizal A et al. (2022b), doi:10.1111/1462-2920.15935
Afrizal, A., Hitch, T.C.A., Viehof, A., Treichel, N., Riedel, T., Abt, B., Buhl, E.M., Kohlheyer, D., Overmann, J., and Clavel, T. "Anaerobic single-cell dispensing facilitates the cultivation of human gut bacteria." Environ. Microbiol. (2022) 24(9):3861-3881.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Faecalibacterium prausnitzii A2-165 organism-specific BioCyc
GOLD: Go0000914 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2 records from provider organism-specific Integrated Microbial Genomes
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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