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Taxonomy browser (Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393)

Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393

Taxonomy ID: 1423732 (for references in articles please use NCBI:txid1423732)
current name
Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393
homotypic synonym:
Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393
NCBI BLAST name: firmicutes
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Lactobacillus casei DSM 20011
heterotypic synonym
Lactobacillus casei JCM 1134
equivalent:
Lactobacillus casei JCM 1134 = DSM 20011
heterotypic synonym
Lactobacillus casei subsp. casei ATCC 393
equivalent:
Lactobacillus [casei subsp. casei] ATCC 393
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus; Lacticaseibacillus casei
   Entrez records   
Database name Direct links Links from type
Nucleotide 374 372
Protein 7,936 -
Structure 3 -
Genome 1 -
Popset 6 -
PubMed Central 3 -
Gene 3,009 -
SRA Experiments 5 -
Identical Protein Groups 5,702 -
BioProject 5 -
BioSample 4 3
Assembly 3 2
Taxonomy 1 -

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Sun Z et al. (2015)
Sun, Z., Harris, H.M., McCann, A., Guo, C., Argimon, S., Zhang, W., Yang, X., Jeffery, I.B., Cooney, J.C., Kagawa, T.F., Liu, W., Song, Y., Salvetti, E., Wrobel, A., Rasinkangas, P., Parkhill, J., Rea, M.C., O'Sullivan, O., Ritari, J., Douillard, F.P., Ross, R.P., Yang, R., Briner, A.E., Felis, G.E., de Vos, W.M., Barrangou, R., Klaenhammer, T.R., Caufield, P.W., Cui, Y., Zhang, H., O'Toole, P.W. "Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera." Nat. Commun. (2015) 6:8322.
Toh H et al. (2013)
Toh, H., Oshima, K., Nakano, A., Takahata, M., Murakami, M., Takaki, T., Nishiyama, H., Igimi, S., Hattori, M., and Morita, H. "Genomic adaptation of the Lactobacillus casei group." PLoS ONE (2013) 8:e75073.
DSM 20011 vis-a-vis JCM 1134 = ATCC 393
The genome sequence of L. casei type strain DSM 20011 (accession AZCO01000000) does not match that of type strain JCM 1134 (accession BALS01000000) or of type strain ATCC 393 (accession AP012544). It is more similar to those of L. paracasei subps. paracasei type strain ATCC 25302 (accession ACGY01000000) and L. paracasei subsp. tolerans type strain DSM 20258 (accession AYYJ01000000).

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lacticaseibacillus casei 03, 7 meta-databases BacDive
Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 organism-specific BioCyc
2 records from this provider organism-specific Genomes On Line Database
3 records from provider organism-specific Integrated Microbial Genomes
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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