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Taxonomy browser (Dickeya dadantii)

Dickeya dadantii

Taxonomy ID: 204038 (for references in articles please use NCBI:txid204038)
current name
Dickeya dadantii Samson et al. 2005 emend. Brady et al. 2012
type strain of Dickeya dadantii: CFBP:1269, ICMP:1544, BCCM/LMG:25991, NCPPB:898, personal::Hayward B374, DSM:18020
includes:
Dickeya sp. CFBP 1269
Dickeya sp. CFBP 3855
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Dickeya
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 3,135 2,767 238
Protein 52,798 47,835 -
Structure 49 14 -
Genome 1 1 -
Popset 73 73 -
GEO Datasets 50 22 -
PubMed Central 918 912 -
Gene 9,745 4,448 -
SRA Experiments 128 119 -
Protein Clusters 2,860 2,860 -
Identical Protein Groups 42,119 40,754 -
BioProject 36 23 -
BioSample 299 158 3
Assembly 23 19 -
PubChem BioAssay 1 - -
Taxonomy 9 1 -

Comments and References:

Brady CL et al. (2012b)
Brady, C.L., Cleenwerck, I., Denman, S., Venter, S.N., Rodriguez-Palenzuela, P., Coutinho, T.A., and De Vos, P. "Proposal to reclassify Brenneria quercina (Hildebrand and Schroth 1967) Hauben et al. 1999 into a new genus, Lonsdalea gen. nov., as Lonsdalea quercina comb. nov., descriptions of Lonsdalea quercina subsp. quercina comb. nov., Lonsdalea quercina subsp. iberica subsp. nov. and Lonsdalea quercina subsp. britannica subsp. nov., emendation of the description of the genus Brenneria, reclassification of Dickeya dieffenbachiae as Dickeya dadantii subsp. dieffenbachiae comb. nov., and emendation of the description of Dickeya dadantii." Int. J. Syst. Evol. Microbiol. (2012) 62:1592-1602.
Samson R et al. (2005)
Samson, R., Legendre, J.B., Christen, R., Fischer-Le Saux, M., Achouak, W., and Gardan, L. "Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov." Int. J. Syst. Evol. Microbiol. (2005) 55:1415-1427.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Dickeya dadantii meta-databases BacDive
2 records from this provider organism-specific BioCyc
Dickeya dadantii Samson et al. 2005 taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Dickeya dadantii culture/stock collections Global Catalogue of Microorganisms
2814123163: Dickeya dadantii DSM 18020 organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
106634 [1 1] 1950-16 [1 86] 1950-17 [1 79] 1950-22 [1 85]
1950-23 [1 85] 2108-5 [9 8] 2120 [1 1] 2121 [1 1]
2122 [1 1] 301660 [1 1] 301677 [1 1] 301767 [1 1]
3937 [4 111 7 1 6 3 4633 101 16] A1042 [5 10 5] A1955 [5 10 5] A5277 [5 10 5]
A5416 [5 5 5] A5419 [5 5 5] A5576 [4 5 4] A5642 [4 4 4]
A5643 [1 1 1] A6060 [5 5 5] A6061 [1 1 1] A622-S1-A17 [1 84]
Aka1-1 [1 1 1] Aka2-1 [5] Aka2-2 [5] B28 [1 1 1]
BAC5003-4 [2] BCC 1035 [4 4 4] BCC 1036 [4 4 4] BI1-1 [1 278 4 1]
BI3-1 [1 1 99 4 1] BTC105 [2 2] C116 [1 1 1] C70 [1 1 1]
C83 [1 1 1] CBNUMPBL_103 [1] CEMTC_9995 [1] CFBP 1269 [7 5 5]
CFBP 3694 [7 6 32] CFBP 3697 [1 1 1] CFBP 3780 [1 1 1] CFBP 3855 [8 7 8]
CFBP 4152 [1 1 1] CFBP 6467 [6 6 6] CFPB1269 [2 1] CK211 [1]
CK221 [1] CK234 [1] CK236 [1] CL149 [1 1 1]
CZ1501 [1 1 650 4119] CZS-B4 [1 1] DCE-01 [1 1 3 2] DPMP625 [1 1 1]
DSM 18020 [1 5 3] Dri1 [6 6 6] E37 [9 9] EP1 [8 6 7]
EP3 [6 6 6] Ech0201 [6 6 5] Ech0862 [7 7 7] Ech1591 strain Ech1591 [1 4 10 7 4183] of Dickeya chrysanthemi Ech1591
Ech3937 [7 7 7] Ech586 strain Ech586 [1 3 9 7 4158] of Dickeya parazeae Ech586 Ech600 [6 6 6] Ech646 [7 7 7]
Ech678 [7 7 7] Ech703 strain Ech703 [1 4 9 6 3995] of Musicola paradisiaca Ech703 Ech721 [7 7 7] Esa2 [5 4]
FZ06 [1 1 2 2] Fukushima1-8 [5] Hosui2-1 [5] Housui2-1 [1 199 1]
ICMP 9290 [1 1] IFB0003 [1 1 1] IPO 1260 [1 1] IPO 2017 [1 1 1]
IPO 2120 [1 1] IPO 2121 [1 1] IPO 2122 [1 1] IPO 2123 [1 1]
IPO 3332 [10 10 9] IPO 597 [1 1] IPO 598 [1 1] IPO 754 [1 1]
JT1 [1] JZMLR [1 1] KAR15 [1 1] Kosui1-1 [5]
Kousui1-1 [1 195 1] Kunimi-3 [1 1 143 1] LA0302 [9 8 8] LA0303 [9 8 8]
LA0305 [9 8 8] LA0401 [10 9] LA0402 [9 8 8] LA0403 [9 8 8]
LA0404 [9 8 8] LA0405 [9 8 8] LA0801 [10 9] LA0802 [9 8 8]
LMG 25991 [8 7 8] LMG 25991T strain LMG 25991 [8 7 8] M2-3 [1 3 4199] MAFF106634 [4 2]
MAFF301660 [1] MAFF301677 [1] MAFF301767 [6 4] MS594 [4 2]
NCPPB 2351 [1 1 1] NCPPB 2477 [1 1 1] NCPPB 2881 [1 1 1] NCPPB 2948 [1 1 1]
NCPPB 2957 [1 1 1] NCPPB 2958 [1 1 1] NCPPB 2976 [1 1 115 13 12] NCPPB 2990 [1 1 1]
NCPPB 3065 [2 1 27] NCPPB 3273 [1 1 1] NCPPB 3458 [1 1 1] NCPPB 3459 [1 1 1]
NCPPB 3476 [1 1 1] NCPPB 3536 [1 1 1] NCPPB 3537 [1 1 63 1 2] NCPPB 4097 [1 1 1]
NCPPB 4424 [10 10 9] NCPPB 454 [1 1 1] NCPPB 898 [1 1 81 13 12] Oka1 [5]
Oka2 [5] OkaW [5] P2 [3 1 2] PD 1132 [1 1 1]
PD 168 [1 1 1] PD 1713 [1 1 1] PD 471 [1 1 1] PD 552 [1 1 1]
PD 598 [1 1 1] PD 753 [1 1 1] PD 916 [1 1 1] PHIL1 [6 5]
PHIL2 [6 5] PHIL3 [6 5] PHIL4 [6 5] R-45446 [4 4 4]
R35 [1 1] S3-1 [1 1 2 4259 2] SP30 [6 6 6] SP34 [6 6 6]
SSY [1] SSY2 [1] SUPP 3081 [5 4] SUPP2162 [5 3]
SUPP2200 [5 4] SUPP877 [5 4] Spi1 [5 5] UFRADD18 [4 4]
WA1-1 [2 1] WNQB-1-6 [2] XJ12 [1 1 2] XJ5-1 [8 7]
XJ5-2 [3 2] XR1 [1] XR2 [1] XR3 [1]
XR4 [1] Yama2 [5] Yana2-1 [5] Yana2-2 [1 211 1]
b52 [1 1] dadantii [1] eg1 [2 2 1] eg4 [2 2 1]
pep2 [2 2 1] pis3 [1] sip4 [1] tom2 [2 2 1]
isolate
1-#17 [4 4 4] A1042-1 [4 4 4] CFBP 2051 [3 3 3] CFBP 3855 [3 3 3]
CFBP1269 [3 3 3] CFBP3698 [3 3 3] D5 [4 4 4] PRI 2120 [3 3 3]
nat-host
Ipomoea batatas [1] Japanese pear [2] Musa acuminata [1] Pelargonium capitatum [1]
Potato stem [1] Streptocarpus ionanthus [1] apple [2] banana [1]
peach [3] potato [4]
culture-collection
CFBP:1269 [3 2 2] CFBP:3855 [2 2 2] DSM:18020 [1 5 3] IBSBF:3288 [1]
PBC<USA-HI>:A5416 [7 5 6] PBC<USA-HI>:A5642 [5 5 5] PBC<USA-HI>:A5643 [5 5 5]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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