Taxonomy browser (Treponema pallidum subsp. pallidum)

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Taxonomy browser (Treponema pallidum subsp. pallidum)

Treponema pallidum subsp. pallidum¹⁾

Taxonomy ID: 161 (for references in articles please use NCBI:txid161)

current name

"Treponema pallidum subsp. pallidum" (Schaudinn and Hoffmann 1905) Schaudinn 1905, effective name²⁾

equivalent:

Treponema pallidum pallidum

Genbank common name: syphilis treponeme
NCBI BLAST name: spirochetes
Rank: subspecies
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema pallidum

Entrez records
Database name	Subtree links	Direct links
Nucleotide	1,753	1,570
Protein	91,488	82,371
Structure	22	1
Genome	1	1
Popset	72	72
Conserved Domains	3	3
PubMed Central	12	12
Gene	8,679	-
SRA Experiments	1,525	872
Identical Protein Groups	6,068	5,316
BioProject	37	26
BioSample	1,640	963
Assembly	97	88
Taxonomy	7	1

Notes:

1) This nominotypical infraspecies name or autonym shares type material with its parent species.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Smibert RM (1984)

Smibert, R.M. "Genus III Treponema Schaudinn 1905, 1728AL" In: (ed.) N.R. Krieg and J.G. Holt. Bergey's Manual of Systematic Bacteriology, vol. 1 (1984) Williams and Wilkins, Baltimore. pp. 49-57. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
2 records from this provider	organism-specific	BioCyc
3 records from this provider	organism-specific	Genomes On Line Database
51 records from this provider	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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