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Taxonomy browser (Pectobacterium actinidiae)

Pectobacterium actinidiae

Taxonomy ID: 1507808 (for references in articles please use NCBI:txid1507808)
current name
Pectobacterium actinidiae Portier et al. 2019
type strain of Pectobacterium actinidiae: personal::KKH3, BCCM/LMG:26003, KCTC:23131
homotypic synonym:
"Pectobacterium carotovorum subsp. actinidiae" Koh et al. 2012, effective name 1)
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium
   Entrez records   
Database name Direct links Links from type
Nucleotide 366 13
Protein 27,288 -
Genome 1 -
Popset 14 -
PubMed Central 8 -
Gene 1 -
Identical Protein Groups 16,743 -
BioProject 8 -
BioSample 9 1
Assembly 9 -
Taxonomy 1 -

Notes:

Comments and References:

Koh YJ et al. (2012)
Koh, Y.J., Kim, G.H., Lee, Y.S. Sohn, S.H., Koh, H.S., Kwon, S., Heu, S., and Jung J.S. "Pectobacterium carotovorum subsp. actinidiae subsp. nov., a new bacterial pathogen causing canker-like symptoms in yellow kiwifruit, Actinidia chinensis." N. Z. J. Crop Hortic. Sci. (2012) 40:269-279. [No PubMed record available.]
Portier P et al. (2019)
Portier, P., Pédron, J., Taghouti, G., Fischer-Le Saux, M., Caullireau, E., Bertrand, C., Laurent, A., Chawki, K., Oulgazi, S., Moumni, M., Andrivon, D., Dutrieux, C., Faure, D., Hélias, V., and Barny, M.A. "Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants." Int. J. Syst. Evol. Microbiol. (2019) 69(10):3207-3216.
Zhang Y et al. (2016d)
Zhang, Y., Fan, Q., and Loria, R. "A re-evaluation of the taxonomy of phytopathogenic genera Dickeya and Pectobacterium using whole-genome sequencing data." Syst. Appl. Microbiol. (2016) 39:252-259. [N.B.: authors suggest elevation of Pectobacterium carotovorum subspp. to species rank.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider organism-specific BioCyc
GOLD: Go0114354 organism-specific Genomes On Line Database
2627854199: Pectobacterium actinidiae KKH3 organism-specific Integrated Microbial Genomes
Pectobacterium actinidiae | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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