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Taxonomy browser (Spirochaetaceae)

Spirochaetaceae

Taxonomy ID: 137 (for references in articles please use NCBI:txid137)
current name
Spirochaetaceae Swellengrebel 1907 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
homotypic synonym:
Spirochaetaceae Swellengrebel 1907 (Approved Lists 1980) emend. Abt et al. 2012, emended name 1) in [Abt B et al. (2012), List of Changes in Taxonomic Opinion No. 17 (2013)]
Spirochaetaceae Schwellengrebel 1907 (Approved Lists 1980) emend. Gupta et al. 2013, emended name 2) in [List of Changes in Taxonomic Opinion No. 19 (2014)]
NCBI BLAST name: spirochetes
Rank: family
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
in-part
Treponemataceae Robinson 1948 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
Lineage( full )
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales
   Entrez records   
Database name Subtree links Direct links
Nucleotide 13,973 13
Protein 179,991 1
Structure 25 -
Genome 50 -
Popset 112 110
Conserved Domains 7 7
GEO Datasets 7 -
PubMed Central 2,075 1,100
Gene 15,349 -
SRA Experiments 109 4
Protein Clusters 14,880 -
Identical Protein Groups 529,588 1
BioProject 93 3
BioSample 820 6
Assembly 497 -
Taxonomy 225 1

Notes:

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Abt B et al. (2012), doi: 10.4056/sigs.2796069, PubMed: abstract
Abt, B., Han, C., Scheuner, C., Lu, M., Lapidus, A., Nolan, M., Lucas, S., Hammon, N., Deshpande, S., Cheng, J.-F., Tapia, R., Goodwin, L, Pitluck, S., Mavromatis, K., Mikhailova, N., Huntemann, M., Pati, A., Chen, A., Palaniappan, K., Land, M., Hauser, L., Brambilla, E., Rohde, M., Spring, S., Gronow, S., Goker, M., Woyke, T., Bristow, J., Eisen, J.A., Markowitz, V., Hugenholtz, P., Kyrpides, N.C., Klenk, H.-P., Detter, J.C. "Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta." Stand. Genomic Sci. (2012) 6(2):194-209.
List of Changes in Taxonomic Opinion No. 17 (2013)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2013) 63(1):8-9.
List of Changes in Taxonomic Opinion No. 19 (2014)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2014) 64(1):8-10. [Erratum: Int. J. Syst. Evol. Microbiol. (2014) 64:2508.]
Gupta RS et al. (2013b)
Gupta, R.S., Mahmood, S., and Adeolu, M. "A phylogenomic and molecular signature based approach for characterization of the phylum Spirochaetes and its major clades: proposal for a taxonomic revision of the phylum." Front. Microbiol. (2013) 4:217. [Erratum: Front. Microbiol. (2013) 4:322.]
Robinson GH (1948)
Roinbson, G.H. "Order V. Spirochaetales Buchanan." In: R.S. Breed, E.G.D. Murray, and A.P. Hitchens (eds.), Bergey's Manual of Determinative Bacteriology, 6th ed. The Williams & Wilkins Co, Baltimore, (1948). pp. 1051-1058. [No PubMed record available.]
Swellengrebel NH (1907)
Swellengrebel, N.H. "Sur la cytologie comparee des spirochetes et des spirilles." Ann. Inst. Pasteur (Paris) (1907) 21:562-586. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Spirochaetaceae taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
3 records from this provider organism-specific Integrated Microbial Genomes
Spirochaetaceae taxonomy/phylogenetic Integrated Taxonomic Information System
Spirochaetaceae taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Spirochaetaceae taxonomy/phylogenetic Ocean Biogeographic Information System
Spirochaetaceae taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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