Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Allocoleopsis franciscana PCC 7113)

Allocoleopsis franciscana PCC 7113

Taxonomy ID: 1173027 (for references in articles please use NCBI:txid1173027)
current name
Allocoleopsis franciscana PCC 7113
equivalent:
Allocoleopsis franciscanus PCC 7113, nom. inval. 1)
Microcoleus sp. PCC 7113
Oscillatoria sp. Mc 2)
NCBI BLAST name: cyanobacteria
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Coleofasciculales; Coleofasciculaceae; Allocoleopsis; Allocoleopsis franciscana
   Entrez records   
Database name Direct links Links from type
Nucleotide 20 20
Protein 7,811 -
Genome 1 -
Gene 6,822 -
SRA Experiments 1 -
Protein Clusters 4,127 -
Identical Protein Groups 7,452 -
BioProject 2 -
BioSample 2 2
Assembly 1 1
Taxonomy 1 -

Notes:

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
PCC 7113
PCC reference strain for Microcoleus lacustris (Rippka R & Herdman H, 1992). Proposed type strain of Allocoleopsis franciscanus (Walter JM et al., 2017b). Proposed as type strain of Allocoleopsis franciscana (Fernandes VMC et al. 2021)
Fernandes VMC et al. (2021), doi:10.1111/jpy.13199
Fernandes, V.M.C., Giraldo-Silva, A., Roush, D., and Garcia-Pichel, F. "Coleofasciculaceae, a monophyletic home for the Microcoleus steenstrupii complex and other desiccation-tolerant filamentous Cyanobacteria." J. Phycol. (2021) 57(5):1563-1579.
Rippka R & Herdman H (1992)
Rippka, R., and Herdmann, H.: Pasteur Culture Collection of Cyanobacterial Strains in Axenic Culture. Cyanobacteria Catalogue & Taxonomic Handbook. Vol. I. Catalogue of Strains 1992/1993. Paris: Institut Pasteur, 1992. [No PubMed record available.]
Shih PM et al. (2013)
Shih, P.M., Wu, D., Latifi, A., Axen, S.D., Fewer, D.P., Talla, E., Calteau, A., Cai, F., Tandeau de Marsac, N., Rippka, R., Herdman, M., Sivonen, K., Coursin, T., Laurent, T., Goodwin, L., Nolan, M., Davenport, K.W., Han, C.S., Rubin, E.M., Eisen, J.A., Woyke, T., Gugger, M., and Kerfeld, C.A. "Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing." Proc. Natl. Acad. Sci. USA (2013) 110:1053-1058.
Walter JM et al. (2017b)
Walter, J.M., Coutinho, F.H., Dutilh, B.E., Swings, J., Thompson, F.L., and Thompson, C.C. "Ecogenomics and taxonomy of Cyanobacteria phylum." Front. Microbiol. (2017) 8:2132.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider organism-specific BioCyc
GOLD: Go0006636 organism-specific Genomes On Line Database
2509276031: Microcoleus sp. PCC 7113 organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]