NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2431522266|ref|YP_010623024|]
View 

ribosomal protein S18 (chloroplast) [Bulbophyllum albociliatum]

Protein Classification

30S ribosomal protein S18( domain architecture ID 10000080)

30S ribosomal protein S18 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
rps18 CHL00077
ribosomal protein S18
 1-86 3.76e-35

ribosomal protein S18


:

Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 115.07  E-value: 3.76e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431522266   1 MDKSKQPFRKSKRSFRRRLPPIGSGDRIDYRNMSLISRFLSEQGKILSRRTNRLTLKQQRLITIAIKQARILSSLPFRNN 80
Cdd:CHL00077    1 MDKSKRPFRKSKRSFRRRLPPIQSGDRIDYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPFLNN 80


                  ....*.
gi 2431522266  81 EKQLER 86
Cdd:CHL00077   81 EKQFER 86
 
Name Accession Description Interval E-value
rps18 CHL00077
ribosomal protein S18
 1-86 3.76e-35

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 115.07  E-value: 3.76e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431522266   1 MDKSKQPFRKSKRSFRRRLPPIGSGDRIDYRNMSLISRFLSEQGKILSRRTNRLTLKQQRLITIAIKQARILSSLPFRNN 80
Cdd:CHL00077    1 MDKSKRPFRKSKRSFRRRLPPIQSGDRIDYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPFLNN 80


                  ....*.
gi 2431522266  81 EKQLER 86
Cdd:CHL00077   81 EKQFER 86
Ribosomal_S18 pfam01084
Ribosomal protein S18;
28-72 4.97e-16

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 65.85  E-value: 4.97e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2431522266  28 IDYRNMSLISRFLSEQGKILSRRTNRLTLKQQRLITIAIKQARIL 72
Cdd:pfam01084   5 IDYKDVELLSQFITERGKILPRRITGLCAKHQRKLAKAIKRARHL 49
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 26-82 2.06e-15

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440008  Cd Length: 81  Bit Score: 64.79  E-value: 2.06e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2431522266  26 DRIDYRNMSLISRFLSEQGKILSRRTNRLTLKQQRLITIAIKQARILSSLPFRNNEK 82
Cdd:COG0238    25 EYIDYKDVELLKKFISERGKILPRRITGTCAKHQRQLATAIKRARHLALLPYVVDHL 81
S18 TIGR00165
ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, ...
 24-80 1.03e-10

ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272937  Cd Length: 70  Bit Score: 52.81  E-value: 1.03e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2431522266  24 SGDRIDYRNMSLISRFLSEQGKILSRRTNRLTLKQQRLITIAIKQARILSSLPFRNN 80
Cdd:TIGR00165  14 GIQFIDYKDLDLLKKFISERGKILPRRITGTSAKYQRRLAVAIKRARYLALLPYVKD 70
 
Name Accession Description Interval E-value
rps18 CHL00077
ribosomal protein S18
 1-86 3.76e-35

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 115.07  E-value: 3.76e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431522266   1 MDKSKQPFRKSKRSFRRRLPPIGSGDRIDYRNMSLISRFLSEQGKILSRRTNRLTLKQQRLITIAIKQARILSSLPFRNN 80
Cdd:CHL00077    1 MDKSKRPFRKSKRSFRRRLPPIQSGDRIDYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPFLNN 80


                  ....*.
gi 2431522266  81 EKQLER 86
Cdd:CHL00077   81 EKQFER 86
Ribosomal_S18 pfam01084
Ribosomal protein S18;
28-72 4.97e-16

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 65.85  E-value: 4.97e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2431522266  28 IDYRNMSLISRFLSEQGKILSRRTNRLTLKQQRLITIAIKQARIL 72
Cdd:pfam01084   5 IDYKDVELLSQFITERGKILPRRITGLCAKHQRKLAKAIKRARHL 49
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 26-82 2.06e-15

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440008  Cd Length: 81  Bit Score: 64.79  E-value: 2.06e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2431522266  26 DRIDYRNMSLISRFLSEQGKILSRRTNRLTLKQQRLITIAIKQARILSSLPFRNNEK 82
Cdd:COG0238    25 EYIDYKDVELLKKFISERGKILPRRITGTCAKHQRQLATAIKRARHLALLPYVVDHL 81
S18 TIGR00165
ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, ...
 24-80 1.03e-10

ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272937  Cd Length: 70  Bit Score: 52.81  E-value: 1.03e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2431522266  24 SGDRIDYRNMSLISRFLSEQGKILSRRTNRLTLKQQRLITIAIKQARILSSLPFRNN 80
Cdd:TIGR00165  14 GIQFIDYKDLDLLKKFISERGKILPRRITGTSAKYQRRLAVAIKRARYLALLPYVKD 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH