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Conserved domains on  [gi|2328387276|ref|YP_010555372|]
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PetD (chloroplast) [Adinobotrys atropurpureus]

Protein Classification

cytochrome b6/f complex subunit IV( domain architecture ID 10000064)

cytochrome b6/f complex subunit IV is a component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
petD CHL00058
cytochrome b6/f complex subunit IV
 1-160 3.92e-118

cytochrome b6/f complex subunit IV


:

Pssm-ID: 176998  Cd Length: 160  Bit Score: 330.04  E-value: 3.92e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276   1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80
Cdd:CHL00058    1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  81 FFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIEKSLTLGLF 160
Cdd:CHL00058   81 FFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
 
Name Accession Description Interval E-value
petD CHL00058
cytochrome b6/f complex subunit IV
 1-160 3.92e-118

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 330.04  E-value: 3.92e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276   1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80
Cdd:CHL00058    1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  81 FFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIEKSLTLGLF 160
Cdd:CHL00058   81 FFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 1-159 6.87e-102

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 289.00  E-value: 6.87e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276   1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80
Cdd:TIGR01156   1 MSVTKKPDLSDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPAMIGEPANPFATPLEILPEWY 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2328387276  81 FFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIEKSLTLGL 159
Cdd:TIGR01156  81 FYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFRRPVATTVFLFGTVVALWLGIGATLPIDKSLTLGL 159
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 3-160 4.44e-91

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 261.65  E-value: 4.44e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276   3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFF 82
Cdd:COG5679     4 LLKKPDLTDPKLRAKLEKGMGHNYYGEPAWPNDLLYIFPVVILGTIALCIGLAVLDPAMMGEPADPFATPLEILPEWYLY 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2328387276  83 PVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIEKSLTLGLF 160
Cdd:COG5679    84 PVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTLGLF 161
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 14-160 7.23e-59

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 179.76  E-value: 7.23e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  14 LRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPN 93
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2328387276  94 KLLGVLLMVSVPAGLLTVPFLENVNKF-QNPFRRPVATTVFLIGTVVALWLGIGATLPIeKSLTLGLF 160
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRsQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYP-FSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
65-152 1.60e-17

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 72.90  E-value: 1.60e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENvNKFQNPFRRPVATTVFLIGTVVALWLG 144
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDR-SPVRSIRYRPLFKIFFWLFVVDFVVLG 79


                  ....*...
gi 2328387276 145 IGATLPIE 152
Cdd:pfam00032  80 WLGKQPPT 87
 
Name Accession Description Interval E-value
petD CHL00058
cytochrome b6/f complex subunit IV
 1-160 3.92e-118

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 330.04  E-value: 3.92e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276   1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80
Cdd:CHL00058    1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  81 FFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIEKSLTLGLF 160
Cdd:CHL00058   81 FFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 1-159 6.87e-102

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 289.00  E-value: 6.87e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276   1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80
Cdd:TIGR01156   1 MSVTKKPDLSDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPAMIGEPANPFATPLEILPEWY 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2328387276  81 FFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIEKSLTLGL 159
Cdd:TIGR01156  81 FYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFRRPVATTVFLFGTVVALWLGIGATLPIDKSLTLGL 159
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 3-160 4.44e-91

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 261.65  E-value: 4.44e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276   3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFF 82
Cdd:COG5679     4 LLKKPDLTDPKLRAKLEKGMGHNYYGEPAWPNDLLYIFPVVILGTIALCIGLAVLDPAMMGEPADPFATPLEILPEWYLY 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2328387276  83 PVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPIEKSLTLGLF 160
Cdd:COG5679    84 PVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTLGLF 161
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 14-160 7.23e-59

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 179.76  E-value: 7.23e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  14 LRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPN 93
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2328387276  94 KLLGVLLMVSVPAGLLTVPFLENVNKF-QNPFRRPVATTVFLIGTVVALWLGIGATLPIeKSLTLGLF 160
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRsQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYP-FSLILQLF 147
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
28-151 3.73e-20

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 85.23  E-value: 3.73e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  28 GEPAWPNDLLY--IFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVP--NKLLGVLLMVS 103
Cdd:COG1290   233 GVPFHPYYTVKdgFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGL 312

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2328387276 104 VPAGLLTVPFLENvNKFQNPFRRPVATTVFLIGTVVALWLGIGATLPI 151
Cdd:COG1290   313 AILVLFLLPFLDR-SPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP 359
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
65-152 1.60e-17

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 72.90  E-value: 1.60e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENvNKFQNPFRRPVATTVFLIGTVVALWLG 144
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDR-SPVRSIRYRPLFKIFFWLFVVDFVVLG 79


                  ....*...
gi 2328387276 145 IGATLPIE 152
Cdd:pfam00032  80 WLGKQPPT 87
CYTB MTH00016
cytochrome b; Validated
 53-152 7.19e-14

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 67.78  E-value: 7.19e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  53 GLAVLEPSMIGE-----PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLeNVNKFQNPFRRP 127
Cdd:MTH00016  242 SVVLLWPNILGDpenfiPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFI-FKQKFRGLSFYP 320

                          90       100
                  ....*....|....*....|....*.
gi 2328387276 128 VATTVFLIGTVVALWLG-IGATlPIE 152
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTwIGGR-PVE 345
CYTB MTH00119
cytochrome b; Provisional
 54-157 9.00e-14

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 67.23  E-value: 9.00e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00119  243 LALFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTF-RPL 321

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2328387276 129 ATTVF--LIGTVVAL-WLGigaTLPIEKSLTL 157
Cdd:MTH00119  322 SQLLFwtLVANLLILtWIG---SQPVEHPFII 350
CYTB MTH00034
cytochrome b; Validated
 54-144 2.71e-13

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 65.88  E-value: 2.71e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00034  242 LALLFPTALNDPenfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTF-RPL 320

                          90
                  ....*....|....*....
gi 2328387276 129 ATTVF--LIGTVVAL-WLG 144
Cdd:MTH00034  321 SQIAFwlLIATFFILtWIG 339
CYTB MTH00145
cytochrome b; Provisional
 52-144 1.80e-12

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 63.77  E-value: 1.80e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  52 VGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLeNVNKFQNPFRR 126
Cdd:MTH00145  241 VFLVLFFPNLLGDPenfipANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLL-HVGKFRSLSFY 319

                          90       100
                  ....*....|....*....|.
gi 2328387276 127 PVATTVF--LIGTVVAL-WLG 144
Cdd:MTH00145  320 PLNQVLFwiFVGNFFILtWIG 340
CYTB MTH00191
cytochrome b; Provisional
 54-144 2.75e-12

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 63.01  E-value: 2.75e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00191  239 LVLFSPNLLGDPenfipANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTF-RPL 317

                          90
                  ....*....|....*....
gi 2328387276 129 ATTVF---LIGTVVALWLG 144
Cdd:MTH00191  318 TQVVFwlwVANFILLTWLG 336
CYTB MTH00131
cytochrome b; Provisional
 54-144 4.47e-12

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 62.36  E-value: 4.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00131  242 LALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTF-RPL 320

                          90
                  ....*....|....*....
gi 2328387276 129 ATTVF--LIGTVVAL-WLG 144
Cdd:MTH00131  321 TQFLFwtLVADVLILtWIG 339
CYTB MTH00100
cytochrome b; Provisional
 54-144 4.73e-12

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 62.35  E-value: 4.73e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLeNVNKFQNPFRRPV 128
Cdd:MTH00100  242 LVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLL-HTSKQRSMMFRPL 320

                          90
                  ....*....|....*....
gi 2328387276 129 ATTVF--LIGTVVAL-WLG 144
Cdd:MTH00100  321 SQCLFwlLVADLLTLtWIG 339
CYTB MTH00022
cytochrome b; Validated
 10-152 4.26e-11

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 59.71  E-value: 4.26e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  10 NDPV-LRAKLAKGMGHNYYGEPAWpndllyiFPVVILGTIACnvGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFP 83
Cdd:MTH00022  205 NNPIgLNSSVDKVSFHVYYTSKDW-------YGIVVLFFLLS--FIVYFAPNLLGDPenfiqANSLVTPVHIQPEWYFLF 275

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2328387276  84 VFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENvNKFQNPFRRP---VATTVFLIGTVVALWLGigaTLPIE 152
Cdd:MTH00022  276 AYAILRSIPNKLGGVVAMFFSILILFFLPLLHT-SWLRGLTFRPlgrMAFWFLIVDFILLTWIG---SQVVE 343
CYTB MTH00074
cytochrome b; Provisional
 54-144 7.79e-11

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 58.92  E-value: 7.79e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00074  243 LSLFSPNLLGDPdnftpANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMF-RPL 321

                          90
                  ....*....|....*....
gi 2328387276 129 ATTVF---LIGTVVALWLG 144
Cdd:MTH00074  322 TQILFwllVANTLILTWIG 340
CYTB MTH00156
cytochrome b; Provisional
 65-144 1.18e-10

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 58.25  E-value: 1.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLeNVNKFQNPFRRPVATTVF--LIGTVVAL- 141
Cdd:MTH00156  248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFT-NKSKFRGNQFYPINKILFwiFVNIVILLt 326


                  ...
gi 2328387276 142 WLG 144
Cdd:MTH00156  327 WIG 329
CYTB MTH00053
cytochrome b; Provisional
 39-144 1.95e-10

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 57.79  E-value: 1.95e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  39 IFPVVILGTIACNvgLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPF 113
Cdd:MTH00053  230 LYGAVILLIILSI--IVFLFPYSLGDAenfkqANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPY 307

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2328387276 114 LENvNKFQNPFRRPVATTVF--LIGTVVAL-WLG 144
Cdd:MTH00053  308 LHK-SRFRGLSFRPLSKILFwfLVGDFFLLtWIG 340
CYTB MTH00224
cytochrome b; Provisional
 54-143 6.31e-10

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 56.47  E-value: 6.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFrRPV 128
Cdd:MTH00224  243 MVLFEPNLFTDPenflmANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPF-YPL 321

                          90
                  ....*....|....*
gi 2328387276 129 ATTVFLIgtVVALWL 143
Cdd:MTH00224  322 NQLLFWL--LVTSWA 334
CYTB MTH00086
cytochrome b; Provisional
 32-144 4.12e-09

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 53.79  E-value: 4.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328387276  32 WPNDLLYIFPVVILgtiacnVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPA 106
Cdd:MTH00086  214 WNKDAYNIIFWLVF------IIFSLFYPFNLGDPemfieADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIV 287

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2328387276 107 GLLTVPFLEN-------VNKFQNpfrrpvatTVFLIGTVVALWLG 144
Cdd:MTH00086  288 VFYFFIFVNNytsclnkLNKFLV--------FSFIVVNVILSWLG 324
CYTB MTH00033
cytochrome b; Provisional
 66-115 9.72e-07

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 47.24  E-value: 9.72e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2328387276  66 ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLE 115
Cdd:MTH00033  258 ANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILD 307
CYTB MTH00046
cytochrome b; Validated
 66-103 4.01e-05

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 42.28  E-value: 4.01e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2328387276  66 ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVS 103
Cdd:MTH00046  251 ADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLS 288
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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