NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|736603248|ref|WP_034611949|]
View 

hypothetical protein [Acinetobacter sp. ETR1]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
AlpA super family cl43837
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];
2-61 6.76e-03

DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3311:

Pssm-ID: 442540 [Multi-domain]  Cd Length: 64  Bit Score: 31.44  E-value: 6.76e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736603248  2 EKYLTSNSVCEMFHISKRTLNRW-QEKTpwgvpFPAPAfgSDGGTMKRYLTTDVIAWEEKC 61
Cdd:COG3311   6 DRLLRLKEVAELLGVSRSTIYRLiKKGE-----FPKPV--KLGGRSVRWRESEVEAWLAAR 59
 
Name Accession Description Interval E-value
AlpA COG3311
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];
2-61 6.76e-03

DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];


Pssm-ID: 442540 [Multi-domain]  Cd Length: 64  Bit Score: 31.44  E-value: 6.76e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736603248  2 EKYLTSNSVCEMFHISKRTLNRW-QEKTpwgvpFPAPAfgSDGGTMKRYLTTDVIAWEEKC 61
Cdd:COG3311   6 DRLLRLKEVAELLGVSRSTIYRLiKKGE-----FPKPV--KLGGRSVRWRESEVEAWLAAR 59
 
Name Accession Description Interval E-value
AlpA COG3311
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];
2-61 6.76e-03

DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];


Pssm-ID: 442540 [Multi-domain]  Cd Length: 64  Bit Score: 31.44  E-value: 6.76e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736603248  2 EKYLTSNSVCEMFHISKRTLNRW-QEKTpwgvpFPAPAfgSDGGTMKRYLTTDVIAWEEKC 61
Cdd:COG3311   6 DRLLRLKEVAELLGVSRSTIYRLiKKGE-----FPKPV--KLGGRSVRWRESEVEAWLAAR 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH