NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|505295556|ref|WP_015482658|]
View 

NADH-quinone oxidoreductase subunit A [Candidatus Portiera aleyrodidarum]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK06602 super family cl00535
NADH:ubiquinone oxidoreductase subunit A; Validated
 23-105 9.63e-13

NADH:ubiquinone oxidoreductase subunit A; Validated


The actual alignment was detected with superfamily member PRK06602:

Pssm-ID: 469809 [Multi-domain]  Cd Length: 121  Bit Score: 59.49  E-value: 9.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505295556  23 YLVGGYSWSPNKEIPFESGIISIDSIKKiNYFAKFYILAILFVIFDLEAIYLFSWAIAIREIGWTGFIGIVIFIFILLIG 102
Cdd:PRK06602  30 KLLGPRAPDREKNSPYESGFEAFGDARM-KFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGFVEAMIFILVLLVG 108


                 ...
gi 505295556 103 LIY 105
Cdd:PRK06602 109 LVY 111
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 23-105 9.63e-13

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 59.49  E-value: 9.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505295556  23 YLVGGYSWSPNKEIPFESGIISIDSIKKiNYFAKFYILAILFVIFDLEAIYLFSWAIAIREIGWTGFIGIVIFIFILLIG 102
Cdd:PRK06602  30 KLLGPRAPDREKNSPYESGFEAFGDARM-KFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGFVEAMIFILVLLVG 108


                 ...
gi 505295556 103 LIY 105
Cdd:PRK06602 109 LVY 111
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 23-87 1.31e-10

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 53.97  E-value: 1.31e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505295556  23 YLVGGYSWSPNKEIPFESGIISIDSIKKiNYFAKFYILAILFVIFDLEAIYLFSWAIAIREIGWT 87
Cdd:COG0838   27 RLLGPKRPNPEKLSPYECGIEPVGDARI-RFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWF 90
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
23-87 5.48e-10

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 51.66  E-value: 5.48e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505295556   23 YLVGGYSWSPNKEIPFESGIISIDSIKKiNYFAKFYILAILFVIFDLEAIYLFSWAIAIREIGWT 87
Cdd:pfam00507   5 RLLGPKRPNPEKLSPYECGFDPVGDARL-RFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWF 68
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 23-105 9.63e-13

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 59.49  E-value: 9.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505295556  23 YLVGGYSWSPNKEIPFESGIISIDSIKKiNYFAKFYILAILFVIFDLEAIYLFSWAIAIREIGWTGFIGIVIFIFILLIG 102
Cdd:PRK06602  30 KLLGPRAPDREKNSPYESGFEAFGDARM-KFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGFVEAMIFILVLLVG 108


                 ...
gi 505295556 103 LIY 105
Cdd:PRK06602 109 LVY 111
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 23-87 1.31e-10

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 53.97  E-value: 1.31e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505295556  23 YLVGGYSWSPNKEIPFESGIISIDSIKKiNYFAKFYILAILFVIFDLEAIYLFSWAIAIREIGWT 87
Cdd:COG0838   27 RLLGPKRPNPEKLSPYECGIEPVGDARI-RFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWF 90
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
23-87 5.48e-10

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 51.66  E-value: 5.48e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 505295556   23 YLVGGYSWSPNKEIPFESGIISIDSIKKiNYFAKFYILAILFVIFDLEAIYLFSWAIAIREIGWT 87
Cdd:pfam00507   5 RLLGPKRPNPEKLSPYECGFDPVGDARL-RFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWF 68
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
55-105 1.77e-05

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 40.88  E-value: 1.77e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 505295556  55 AKFYILAILFVIFDLEAIYLFSWAIAIREIGWTGFIGIVIFIFILLIGLIY 105
Cdd:PRK07756  62 ARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAY 112
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
55-105 7.01e-05

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 39.26  E-value: 7.01e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 505295556  55 AKFYILAILFVIFDLEAIYLFSWAIAIREIGWTGFIGIVIFIFILLIGLIY 105
Cdd:PRK08489  66 SHFYIMALLFILFDVEIVFMFPWAVDFKLLGLFGLIEMLLFIVLLTIGFIY 116
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 56-86 7.39e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 38.88  E-value: 7.39e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 505295556  56 KFYILAILFVIFDLEAIYLFSWAIAIREIGW 86
Cdd:PRK07928  60 KYYLTAMLFIVFDIEIVFLYPWAVSFDALGV 90
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 56-106 3.02e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 34.69  E-value: 3.02e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 505295556  56 KFYILAILFVIFDLEAIYLFSWAIAIREIGWTGFIGIVIFIFILLIGLIYD 106
Cdd:MTH00055  59 RFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLIILTIGLIYE 109
ndhC CHL00022
NADH dehydrogenase subunit 3
 56-105 5.63e-03

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 33.81  E-value: 5.63e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 505295556  56 KFYILAILFVIFDLEAIYLFSWAIAIREIGWTGFIGIVIFIFILLIGLIY 105
Cdd:CHL00022  61 RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEALIFVLILIVGLVY 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH