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Conserved domains on  [gi|505202983|ref|WP_015390085|]
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DUF3460 family protein [Candidatus Kinetoplastibacterium blastocrithidii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3460 super family cl13392
Protein of unknown function (DUF3460); This family of proteins are functionally ...
 5-60 7.59e-21

Protein of unknown function (DUF3460); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.


The actual alignment was detected with superfamily member pfam11943:

Pssm-ID: 463407  Cd Length: 58  Bit Score: 76.51  E-value: 7.59e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 505202983   5 YESDITIFIREYNKTHPSLREQQVDGRLILWDKRIETDLIKDFELSRVSQKPYVYQ 60
Cdd:pfam11943  2 YESEHTQFINELKAKHPELEEEQRAGRALLWDKPVDLEEQARFRAARVPQKPYVYQ 57
 
Name Accession Description Interval E-value
DUF3460 pfam11943
Protein of unknown function (DUF3460); This family of proteins are functionally ...
 5-60 7.59e-21

Protein of unknown function (DUF3460); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.


Pssm-ID: 463407  Cd Length: 58  Bit Score: 76.51  E-value: 7.59e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 505202983   5 YESDITIFIREYNKTHPSLREQQVDGRLILWDKRIETDLIKDFELSRVSQKPYVYQ 60
Cdd:pfam11943  2 YESEHTQFINELKAKHPELEEEQRAGRALLWDKPVDLEEQARFRAARVPQKPYVYQ 57
 
Name Accession Description Interval E-value
DUF3460 pfam11943
Protein of unknown function (DUF3460); This family of proteins are functionally ...
 5-60 7.59e-21

Protein of unknown function (DUF3460); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.


Pssm-ID: 463407  Cd Length: 58  Bit Score: 76.51  E-value: 7.59e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 505202983   5 YESDITIFIREYNKTHPSLREQQVDGRLILWDKRIETDLIKDFELSRVSQKPYVYQ 60
Cdd:pfam11943  2 YESEHTQFINELKAKHPELEEEQRAGRALLWDKPVDLEEQARFRAARVPQKPYVYQ 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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