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Conserved domains on  [gi|499987758|ref|WP_011668476|]
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MULTISPECIES: 50S ribosomal protein L36 [Lactobacillaceae]

Protein Classification

50S ribosomal protein L36( domain architecture ID 10452018)

50S ribosomal protein L36 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0003735|GO:0006412|GO:0005840
PubMed:  27986857

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-38 7.64e-14

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440027  Cd Length: 38  Bit Score: 57.06  E-value: 7.64e-14
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 499987758  1 MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38
Cdd:COG0257   1 MKVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-38 7.64e-14

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 57.06  E-value: 7.64e-14
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 499987758  1 MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38
Cdd:COG0257   1 MKVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-38 2.12e-13

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 55.98  E-value: 2.12e-13
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 499987758   1 MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-38 4.86e-12

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 52.65  E-value: 4.86e-12
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 499987758  1 MKVRPSVKPMCEHCKVIKRKGRVMVICsANPKHKQRQG 38
Cdd:PRK00465  1 MKVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQG 37
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-38 4.04e-07

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 40.16  E-value: 4.04e-07
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 499987758   1 MKVRPSVKPMCEHCKVIKRKGRVMVICSaNPKHKQRQG 38
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG 37
 
Name Accession Description Interval E-value
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-38 7.64e-14

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 57.06  E-value: 7.64e-14
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 499987758  1 MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38
Cdd:COG0257   1 MKVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-38 2.12e-13

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 55.98  E-value: 2.12e-13
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 499987758   1 MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-38 4.86e-12

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 52.65  E-value: 4.86e-12
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 499987758  1 MKVRPSVKPMCEHCKVIKRKGRVMVICsANPKHKQRQG 38
Cdd:PRK00465  1 MKVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQG 37
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-38 4.04e-07

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 40.16  E-value: 4.04e-07
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 499987758   1 MKVRPSVKPMCEHCKVIKRKGRVMVICSaNPKHKQRQG 38
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 1-38 2.23e-05

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 36.12  E-value: 2.23e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 499987758  1 MKVRPSVKPMCEH---CKVIKRKGRVMVICSANPKHKQRQG 38
Cdd:PRK00831  1 MKVRNSLKSLKNRhrdCQVVRRKGRVYVINKKNPRFKARQG 41
rpl36 CHL00029
ribosomal protein L36
 1-26 2.48e-04

ribosomal protein L36


Pssm-ID: 176970  Cd Length: 26  Bit Score: 32.93  E-value: 2.48e-04
                        10        20
                ....*....|....*....|....*.
gi 499987758  1 MKVRPSVKPMCEHCKVIKRKGRVMVI 26
Cdd:CHL00029  1 MKIRASVRKICEKCRLIRRRGRIFVI 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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