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Conserved domains on  [gi|497486474|ref|WP_009800672|]
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MULTISPECIES: 50S ribosomal protein L33 [Maricaulaceae]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-53 5.92e-21

50S ribosomal protein L33; Validated


:

Pssm-ID: 179075  Cd Length: 53  Bit Score: 76.39  E-value: 5.92e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 497486474  1 MAKPTTIKIRLNSTAGTGYFYVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-53 5.92e-21

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 76.39  E-value: 5.92e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 497486474  1 MAKPTTIKIRLNSTAGTGYFYVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-53 2.49e-16

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 64.41  E-value: 2.49e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 497486474  1 MAKPTtIKIRLNSTAGTGYFYVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:COG0267   1 MAGMR-EKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
8-53 5.46e-15

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 60.90  E-value: 5.46e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 497486474   8 KIRLNSTAGTGYFYVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-53 2.26e-13

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 57.07  E-value: 2.26e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 497486474   2 AKPTTIKIRLNSTAGTGYFYVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:TIGR01023  3 KKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-53 5.92e-21

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 76.39  E-value: 5.92e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 497486474  1 MAKPTTIKIRLNSTAGTGYFYVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-53 2.49e-16

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 64.41  E-value: 2.49e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 497486474  1 MAKPTtIKIRLNSTAGTGYFYVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:COG0267   1 MAGMR-EKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
8-53 5.46e-15

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 60.90  E-value: 5.46e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 497486474   8 KIRLNSTAGTGYFYVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-53 2.26e-13

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 57.07  E-value: 2.26e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 497486474   2 AKPTTIKIRLNSTAGTGYFYVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:TIGR01023  3 KKGARELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
rpmG PRK00504
50S ribosomal protein L33; Validated
 21-53 1.53e-03

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 32.20  E-value: 1.53e-03
                        10        20        30
                ....*....|....*....|....*....|...
gi 497486474 21 YVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:PRK00504 18 YTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
rpl33 CHL00104
ribosomal protein L33
 21-53 9.92e-03

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 30.33  E-value: 9.92e-03
                        10        20        30
                ....*....|....*....|....*....|...
gi 497486474 21 YVTKKNARTMTEKLVLKKYDPVARKHVEFKEGK 53
Cdd:CHL00104 33 YITQKNRHNTPNRLELKKFCPYCYKHTIHKEIK 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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