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Conserved domains on  [gi|493761332|ref|WP_006710015|]
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shufflon system plasmid conjugative transfer pilus tip adhesin PilV, partial [Serratia symbiotica]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Shufflon_N super family cl20035
Bacterial shufflon protein, N-terminal constant region; This family represents the ...
 1-82 5.40e-38

Bacterial shufflon protein, N-terminal constant region; This family represents the high-similarity N-terminal 'constant region' shared by shufflon proteins.


The actual alignment was detected with superfamily member pfam04917:

Pssm-ID: 309860  Cd Length: 324  Bit Score: 132.04  E-value: 5.40e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493761332    1 GWLNEAHGGGFYMDDNDWIRSVNNKGIYTGGQLKGGTVRADGRLSTGEFLQLDGTAQPGWECSTTGLVGRTPEGTLLSCQ 80
Cdd:pfam04917 243 GWMNETHGGGWYMSDSSWLRSVNNKGIYTGGQVKGGTVRADGRLYTGEYLQLEKTAVAGASCSPNGLVGRDSTGAILSCQ 322


                  ..
gi 493761332   81 NG 82
Cdd:pfam04917 323 SG 324
 
Name Accession Description Interval E-value
Shufflon_N pfam04917
Bacterial shufflon protein, N-terminal constant region; This family represents the ...
 1-82 5.40e-38

Bacterial shufflon protein, N-terminal constant region; This family represents the high-similarity N-terminal 'constant region' shared by shufflon proteins.


Pssm-ID: 309860  Cd Length: 324  Bit Score: 132.04  E-value: 5.40e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493761332    1 GWLNEAHGGGFYMDDNDWIRSVNNKGIYTGGQLKGGTVRADGRLSTGEFLQLDGTAQPGWECSTTGLVGRTPEGTLLSCQ 80
Cdd:pfam04917 243 GWMNETHGGGWYMSDSSWLRSVNNKGIYTGGQVKGGTVRADGRLYTGEYLQLEKTAVAGASCSPNGLVGRDSTGAILSCQ 322


                  ..
gi 493761332   81 NG 82
Cdd:pfam04917 323 SG 324
 
Name Accession Description Interval E-value
Shufflon_N pfam04917
Bacterial shufflon protein, N-terminal constant region; This family represents the ...
 1-82 5.40e-38

Bacterial shufflon protein, N-terminal constant region; This family represents the high-similarity N-terminal 'constant region' shared by shufflon proteins.


Pssm-ID: 309860  Cd Length: 324  Bit Score: 132.04  E-value: 5.40e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493761332    1 GWLNEAHGGGFYMDDNDWIRSVNNKGIYTGGQLKGGTVRADGRLSTGEFLQLDGTAQPGWECSTTGLVGRTPEGTLLSCQ 80
Cdd:pfam04917 243 GWMNETHGGGWYMSDSSWLRSVNNKGIYTGGQVKGGTVRADGRLYTGEYLQLEKTAVAGASCSPNGLVGRDSTGAILSCQ 322


                  ..
gi 493761332   81 NG 82
Cdd:pfam04917 323 SG 324
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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