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Conserved domains on  [gi|492316153|ref|WP_005807074|]
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MULTISPECIES: DUF4134 domain-containing protein [Bacteroidales]

Protein Classification

DUF4134 domain-containing protein( domain architecture ID 10612019)

DUF4134 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4134 pfam13572
Domain of unknown function (DUF4134); Based on Bacteroides thetaiotaomicron gene BT_0095, a ...
 24-121 3.63e-28

Domain of unknown function (DUF4134); Based on Bacteroides thetaiotaomicron gene BT_0095, a putative uncharacterized protein As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), It appears to be upregulated in the presence of host or vs when in culture.


:

Pssm-ID: 433320  Cd Length: 92  Bit Score: 98.46  E-value: 3.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492316153   24 KMLALTLFSGTTAMAQSTagdysaGTTALSTVAEEIVKYVPVMVKLCYAIAGVVAIIGAISVYIAMNNEEQDVKKKIMMV 103
Cdd:pfam13572   1 MLVLLLALAPLAAFAQSG------GAAGITEATSEVTSYFDPVTNLMYAIGAVVGLIGAVRVYIKWNSGDQDTKKVAMAW 74

                          90
                  ....*....|....*...
gi 492316153  104 VGACLFLIAAAQALPLFF 121
Cdd:pfam13572  75 FGACIFLIVAATVLPAFF 92
 
Name Accession Description Interval E-value
DUF4134 pfam13572
Domain of unknown function (DUF4134); Based on Bacteroides thetaiotaomicron gene BT_0095, a ...
 24-121 3.63e-28

Domain of unknown function (DUF4134); Based on Bacteroides thetaiotaomicron gene BT_0095, a putative uncharacterized protein As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), It appears to be upregulated in the presence of host or vs when in culture.


Pssm-ID: 433320  Cd Length: 92  Bit Score: 98.46  E-value: 3.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492316153   24 KMLALTLFSGTTAMAQSTagdysaGTTALSTVAEEIVKYVPVMVKLCYAIAGVVAIIGAISVYIAMNNEEQDVKKKIMMV 103
Cdd:pfam13572   1 MLVLLLALAPLAAFAQSG------GAAGITEATSEVTSYFDPVTNLMYAIGAVVGLIGAVRVYIKWNSGDQDTKKVAMAW 74

                          90
                  ....*....|....*...
gi 492316153  104 VGACLFLIAAAQALPLFF 121
Cdd:pfam13572  75 FGACIFLIVAATVLPAFF 92
 
Name Accession Description Interval E-value
DUF4134 pfam13572
Domain of unknown function (DUF4134); Based on Bacteroides thetaiotaomicron gene BT_0095, a ...
 24-121 3.63e-28

Domain of unknown function (DUF4134); Based on Bacteroides thetaiotaomicron gene BT_0095, a putative uncharacterized protein As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), It appears to be upregulated in the presence of host or vs when in culture.


Pssm-ID: 433320  Cd Length: 92  Bit Score: 98.46  E-value: 3.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492316153   24 KMLALTLFSGTTAMAQSTagdysaGTTALSTVAEEIVKYVPVMVKLCYAIAGVVAIIGAISVYIAMNNEEQDVKKKIMMV 103
Cdd:pfam13572   1 MLVLLLALAPLAAFAQSG------GAAGITEATSEVTSYFDPVTNLMYAIGAVVGLIGAVRVYIKWNSGDQDTKKVAMAW 74

                          90
                  ....*....|....*...
gi 492316153  104 VGACLFLIAAAQALPLFF 121
Cdd:pfam13572  75 FGACIFLIVAATVLPAFF 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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