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Conserved domains on  [gi|490419197|ref|WP_004291505|]
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MULTISPECIES: DUF3408 domain-containing protein [Bacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3408 super family cl13347
Protein of unknown function (DUF3408); This family of proteins are functionally ...
 1-112 1.54e-20

Protein of unknown function (DUF3408); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.


The actual alignment was detected with superfamily member pfam11888:

Pssm-ID: 432165  Cd Length: 136  Bit Score: 80.13  E-value: 1.54e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490419197    1 MEKEMTPNEKRPQQdcggmftQVQASVEILSPVPVSGKCSEK-------DYERLFIRDPEVKARegKMAYVRPEYHERIM 73
Cdd:pfam11888  27 PAEEEKVSQKEEQE-------EEARTVPTPEPKDVQKRESGKrrktsleDYRERFLKRKKLKAR--KSVYISRELHERLA 97

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 490419197   74 RITRVIGHDRLTLSAYIDHVLTHHFNQCEDAIKSLYARN 112
Cdd:pfam11888  98 RIVPVIGGRKMSVSGYVDNILRHHLEEYKDEINELYNKK 136
 
Name Accession Description Interval E-value
DUF3408 pfam11888
Protein of unknown function (DUF3408); This family of proteins are functionally ...
 1-112 1.54e-20

Protein of unknown function (DUF3408); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.


Pssm-ID: 432165  Cd Length: 136  Bit Score: 80.13  E-value: 1.54e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490419197    1 MEKEMTPNEKRPQQdcggmftQVQASVEILSPVPVSGKCSEK-------DYERLFIRDPEVKARegKMAYVRPEYHERIM 73
Cdd:pfam11888  27 PAEEEKVSQKEEQE-------EEARTVPTPEPKDVQKRESGKrrktsleDYRERFLKRKKLKAR--KSVYISRELHERLA 97

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 490419197   74 RITRVIGHDRLTLSAYIDHVLTHHFNQCEDAIKSLYARN 112
Cdd:pfam11888  98 RIVPVIGGRKMSVSGYVDNILRHHLEEYKDEINELYNKK 136
 
Name Accession Description Interval E-value
DUF3408 pfam11888
Protein of unknown function (DUF3408); This family of proteins are functionally ...
 1-112 1.54e-20

Protein of unknown function (DUF3408); This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.


Pssm-ID: 432165  Cd Length: 136  Bit Score: 80.13  E-value: 1.54e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490419197    1 MEKEMTPNEKRPQQdcggmftQVQASVEILSPVPVSGKCSEK-------DYERLFIRDPEVKARegKMAYVRPEYHERIM 73
Cdd:pfam11888  27 PAEEEKVSQKEEQE-------EEARTVPTPEPKDVQKRESGKrrktsleDYRERFLKRKKLKAR--KSVYISRELHERLA 97

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 490419197   74 RITRVIGHDRLTLSAYIDHVLTHHFNQCEDAIKSLYARN 112
Cdd:pfam11888  98 RIVPVIGGRKMSVSGYVDNILRHHLEEYKDEINELYNKK 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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