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Conserved domains on  [gi|488012269|ref|WP_002083668|]
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MULTISPECIES: hypothetical protein [Bacillus cereus group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FixH super family cl46415
FixH; This family consists of several Rhizobium FixH like proteins. It has been suggested that ...
 1-27 4.16e-04

FixH; This family consists of several Rhizobium FixH like proteins. It has been suggested that suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalyzed by FixG.


The actual alignment was detected with superfamily member COG3198:

Pssm-ID: 480755  Cd Length: 168  Bit Score: 39.15  E-value: 4.16e-04
                         10        20
                 ....*....|....*....|....*..
gi 488012269   1 MKKPFYKKWWVWIITALLIIFVAAGVS 27
Cdd:COG3198    7 MAKPWYKQFWPWFLIALPLAVVVAGLV 33
SurA_N_3 super family cl21568
SurA N-terminal domain; This domain is found at the N-terminus of the chaperone SurA. It is a ...
 7-64 8.76e-03

SurA N-terminal domain; This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.


The actual alignment was detected with superfamily member pfam13624:

Pssm-ID: 473912 [Multi-domain]  Cd Length: 162  Bit Score: 35.24  E-value: 8.76e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 488012269    7 KKWWVWIITALLII-FVAAGVSGNKKDSTKPAIAENKEtKLTVDEYKQRVETALKEMGE 64
Cdd:pfam13624  10 KSWIAKIILGLIILsFVFWGVGSYFSGGGGAVAKVNGE-KISRAEFQRAYRRQLDQLRQ 67
 
Name Accession Description Interval E-value
COG3198 COG3198
Uncharacterized conserved protein [Function unknown];
1-27 4.16e-04

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 442431  Cd Length: 168  Bit Score: 39.15  E-value: 4.16e-04
                         10        20
                 ....*....|....*....|....*..
gi 488012269   1 MKKPFYKKWWVWIITALLIIFVAAGVS 27
Cdd:COG3198    7 MAKPWYKQFWPWFLIALPLAVVVAGLV 33
SurA_N_3 pfam13624
SurA N-terminal domain; This domain is found at the N-terminus of the chaperone SurA. It is a ...
 7-64 8.76e-03

SurA N-terminal domain; This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.


Pssm-ID: 433358 [Multi-domain]  Cd Length: 162  Bit Score: 35.24  E-value: 8.76e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 488012269    7 KKWWVWIITALLII-FVAAGVSGNKKDSTKPAIAENKEtKLTVDEYKQRVETALKEMGE 64
Cdd:pfam13624  10 KSWIAKIILGLIILsFVFWGVGSYFSGGGGAVAKVNGE-KISRAEFQRAYRRQLDQLRQ 67
 
Name Accession Description Interval E-value
COG3198 COG3198
Uncharacterized conserved protein [Function unknown];
1-27 4.16e-04

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 442431  Cd Length: 168  Bit Score: 39.15  E-value: 4.16e-04
                         10        20
                 ....*....|....*....|....*..
gi 488012269   1 MKKPFYKKWWVWIITALLIIFVAAGVS 27
Cdd:COG3198    7 MAKPWYKQFWPWFLIALPLAVVVAGLV 33
SurA_N_3 pfam13624
SurA N-terminal domain; This domain is found at the N-terminus of the chaperone SurA. It is a ...
 7-64 8.76e-03

SurA N-terminal domain; This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.


Pssm-ID: 433358 [Multi-domain]  Cd Length: 162  Bit Score: 35.24  E-value: 8.76e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 488012269    7 KKWWVWIITALLII-FVAAGVSGNKKDSTKPAIAENKEtKLTVDEYKQRVETALKEMGE 64
Cdd:pfam13624  10 KSWIAKIILGLIILsFVFWGVGSYFSGGGGAVAKVNGE-KISRAEFQRAYRRQLDQLRQ 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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