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Conserved domains on  [gi|487878035|ref|WP_001951501|]
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DUF262 domain-containing protein [Helicobacter pylori]

Protein Classification

DUF262 domain-containing protein( domain architecture ID 10505245)

DUF262 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF262 pfam03235
Protein of unknown function DUF262;
9-58 1.26e-10

Protein of unknown function DUF262;


:

Pssm-ID: 427209 [Multi-domain]  Cd Length: 78  Bit Score: 51.50  E-value: 1.26e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 487878035   9 IKEVVDGLNvRYFLPDIQREYVWlqnaDGKKIEQLFDSILRGYPIGSFLF 58
Cdd:pfam03235  1 VLPLLSDET-IFDIPDYQRLYVW----RKKQVSRLIEDLLYGYPIGSIVL 45
 
Name Accession Description Interval E-value
DUF262 pfam03235
Protein of unknown function DUF262;
9-58 1.26e-10

Protein of unknown function DUF262;


Pssm-ID: 427209 [Multi-domain]  Cd Length: 78  Bit Score: 51.50  E-value: 1.26e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 487878035   9 IKEVVDGLNvRYFLPDIQREYVWlqnaDGKKIEQLFDSILRGYPIGSFLF 58
Cdd:pfam03235  1 VLPLLSDET-IFDIPDYQRLYVW----RKKQVSRLIEDLLYGYPIGSIVL 45
GmrSD COG1479
DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE ...
 6-60 3.44e-08

DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domains [Defense mechanisms];


Pssm-ID: 441088 [Multi-domain]  Cd Length: 544  Bit Score: 48.12  E-value: 3.44e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 487878035   6 DKTIKEVVDGlNVRYFLPDIQREYVWlqnaDGKKIEQLFDSILRG-------YPIGSFLFWK 60
Cdd:COG1479    5 EKSLGELLSG-NGRFVIPDYQRPYVW----TEEQVEDLLDDILRGfenndseYFLGSIVLWE 61
 
Name Accession Description Interval E-value
DUF262 pfam03235
Protein of unknown function DUF262;
9-58 1.26e-10

Protein of unknown function DUF262;


Pssm-ID: 427209 [Multi-domain]  Cd Length: 78  Bit Score: 51.50  E-value: 1.26e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 487878035   9 IKEVVDGLNvRYFLPDIQREYVWlqnaDGKKIEQLFDSILRGYPIGSFLF 58
Cdd:pfam03235  1 VLPLLSDET-IFDIPDYQRLYVW----RKKQVSRLIEDLLYGYPIGSIVL 45
GmrSD COG1479
DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE ...
 6-60 3.44e-08

DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domains [Defense mechanisms];


Pssm-ID: 441088 [Multi-domain]  Cd Length: 544  Bit Score: 48.12  E-value: 3.44e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 487878035   6 DKTIKEVVDGlNVRYFLPDIQREYVWlqnaDGKKIEQLFDSILRG-------YPIGSFLFWK 60
Cdd:COG1479    5 EKSLGELLSG-NGRFVIPDYQRPYVW----TEEQVEDLLDDILRGfenndseYFLGSIVLWE 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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