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Conserved domains on  [gi|627203014|gb|KCT22435|]
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hemolysin [Mycobacterium tuberculosis XTB13-121]

Protein Classification

membrane protein insertion efficiency factor( domain architecture ID 10485334)

membrane protein insertion efficiency factor such as Escherichia coli YidD, which may be involved in the insertion of integral membrane proteins into the membrane

Gene Ontology:  GO:0005886
PubMed:  21803992

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 21-85 1.28e-33

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


:

Pssm-ID: 460342  Cd Length: 67  Bit Score: 111.31  E-value: 1.28e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 627203014   21 RGLIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDP 85
Cdd:pfam01809   2 KLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDP 66
 
Name Accession Description Interval E-value
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 21-85 1.28e-33

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


Pssm-ID: 460342  Cd Length: 67  Bit Score: 111.31  E-value: 1.28e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 627203014   21 RGLIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDP 85
Cdd:pfam01809   2 KLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDP 66
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 20-86 1.99e-32

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440522  Cd Length: 71  Bit Score: 108.67  E-value: 1.99e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 627203014  20 ARGLIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPI 86
Cdd:COG0759    5 KRLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
TIGR00278 TIGR00278
putative membrane protein insertion efficiency factor; This model describes a family, YidD, of ...
 23-88 1.05e-28

putative membrane protein insertion efficiency factor; This model describes a family, YidD, of small, non-essential proteins now suggested to improve YidC-dependent inner membrane protein insertion. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. [Hypothetical proteins, Conserved]


Pssm-ID: 272995  Cd Length: 75  Bit Score: 99.46  E-value: 1.05e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 627203014   23 LIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIPE 88
Cdd:TIGR00278   1 LIALIRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGNDPVPK 66
PRK14383 PRK14383
membrane protein insertion efficiency factor YidD;
18-94 1.38e-24

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237698 [Multi-domain]  Cd Length: 84  Bit Score: 89.25  E-value: 1.38e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 627203014  18 ASARGLIFVIQVYRHMLSPLRPA-SCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIPEGLTTGR 94
Cdd:PRK14383   3 MAARGLVRAVRWYQRVLSPRKPApTCRFSPTCSQYAVEAIERHGALKGGWLALWRVLRCNPLVPGGFDPVPEHFPARR 80
 
Name Accession Description Interval E-value
YidD pfam01809
Putative membrane protein insertion efficiency factor; This family consists of membrane ...
 21-85 1.28e-33

Putative membrane protein insertion efficiency factor; This family consists of membrane insertion efficiency factor proteins. They contain three conserved cysteine residues. Family members such as YidD may be involved in insertion of integral membrane proteins into the membrane by assisting YidC (membrane protein insertase). Some members of the yidD family have been previously thought to posses alpha-hemolysin activity, however no sufficient evidence was found to corroborate this idea. Secondary structure prediction indicated the presence of three alpha-helices in YidD. None of the three alpha-helices appeared sufficiently hydrophobic to serve as a transmembrane, suggesting a cytoplasmic localization for YidD. However, a closer examination of the alpha-helical wheel projection of the predicted first alpha-helix in YidD suggested an amphipathic structure in its N-terminal region which might be involved in membrane targeting.


Pssm-ID: 460342  Cd Length: 67  Bit Score: 111.31  E-value: 1.28e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 627203014   21 RGLIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDP 85
Cdd:pfam01809   2 KLLIGLIRFYQRFISPLLPPSCRFYPTCSEYAIEAIEKHGALKGGWLALKRILRCHPFHPGGYDP 66
YidD COG0759
Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC ...
 20-86 1.99e-32

Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440522  Cd Length: 71  Bit Score: 108.67  E-value: 1.99e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 627203014  20 ARGLIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPI 86
Cdd:COG0759    5 KRLLIGLIRFYQRFISPLLGPRCRFYPTCSEYALEAIERHGLLKGSWLTLKRILRCHPWHPGGYDPV 71
TIGR00278 TIGR00278
putative membrane protein insertion efficiency factor; This model describes a family, YidD, of ...
 23-88 1.05e-28

putative membrane protein insertion efficiency factor; This model describes a family, YidD, of small, non-essential proteins now suggested to improve YidC-dependent inner membrane protein insertion. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. [Hypothetical proteins, Conserved]


Pssm-ID: 272995  Cd Length: 75  Bit Score: 99.46  E-value: 1.05e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 627203014   23 LIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIPE 88
Cdd:TIGR00278   1 LIALIRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGNDPVPK 66
PRK14383 PRK14383
membrane protein insertion efficiency factor YidD;
18-94 1.38e-24

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237698 [Multi-domain]  Cd Length: 84  Bit Score: 89.25  E-value: 1.38e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 627203014  18 ASARGLIFVIQVYRHMLSPLRPA-SCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIPEGLTTGR 94
Cdd:PRK14383   3 MAARGLVRAVRWYQRVLSPRKPApTCRFSPTCSQYAVEAIERHGALKGGWLALWRVLRCNPLVPGGFDPVPEHFPARR 80
PRK14371 PRK14371
hypothetical protein; Provisional
 27-95 4.09e-23

hypothetical protein; Provisional


Pssm-ID: 172847  Cd Length: 81  Bit Score: 85.36  E-value: 4.09e-23
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 627203014  27 IQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIPEGLTTGRS 95
Cdd:PRK14371   9 IQFYRYAISPLMASHCRFYPSCSCYAYEAIENHGLLRGGWLSVRRLGRCHPWNPGGYDPVPPAPTSRSS 77
PRK14381 PRK14381
membrane protein insertion efficiency factor YidD;
26-87 1.60e-22

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172857  Cd Length: 103  Bit Score: 84.52  E-value: 1.60e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 627203014  26 VIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14381  18 LIHLYRWTISPLLGSPCRFFPSCSQYALQALKHHGCIMGLWLTIKRIGKCGPWHPGGIDLVP 79
PRK14391 PRK14391
membrane protein insertion efficiency factor YidD;
21-97 9.41e-21

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172867  Cd Length: 84  Bit Score: 79.30  E-value: 9.41e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 627203014  21 RGLIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP-----EGLTTGRS 95
Cdd:PRK14391   3 QFVIQLIQLYKKIISPLLPPACRFTPTCSEYAAQAFQECGFFQAIQLSAWRILRCNPLSQGFDDPLPpntkgTNLTHGRQ 82


                 ..
gi 627203014  96 CQ 97
Cdd:PRK14391  83 TK 84
PRK14389 PRK14389
membrane protein insertion efficiency factor YidD;
21-88 1.02e-20

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184656  Cd Length: 98  Bit Score: 79.59  E-value: 1.02e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 627203014  21 RGLIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIPE 88
Cdd:PRK14389   4 RLLMALVRGYRLLLSPWLGSACRFEPTCSAYSLQALEQHGAAAGSYLTLRRLARCHPWCDGGHDPVPQ 71
PRK14380 PRK14380
hypothetical protein; Provisional
 25-86 1.09e-20

hypothetical protein; Provisional


Pssm-ID: 184654  Cd Length: 81  Bit Score: 79.22  E-value: 1.09e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 627203014  25 FVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPI 86
Cdd:PRK14380  14 LPIKMYQYFISPLITPCCRYYPSCSEYADSAIKHYGVIKGLLMALNRLSRCHPWSKGGYDPL 75
PRK14379 PRK14379
membrane protein insertion efficiency factor YidD;
23-95 2.48e-20

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237697  Cd Length: 95  Bit Score: 78.71  E-value: 2.48e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 627203014  23 LIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIPEGLTTGRS 95
Cdd:PRK14379   5 LIFLVRVYQKFISPILPPSCRYYPTCSSYMIDALKKHGPILGLIMGLARILRCNPFIRGGVDPVPDYFTLRRN 77
PRK14388 PRK14388
membrane protein insertion efficiency factor YidD;
20-87 1.27e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172864  Cd Length: 82  Bit Score: 76.47  E-value: 1.27e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 627203014  20 ARGLIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14388   2 TRILLLLLRFYQYFISPLLGNNCRFHPTCSEYAKEAISMHGSIKGLWFTFKRIIKCQPFCDGGYDTVP 69
PRK14386 PRK14386
membrane protein insertion efficiency factor YidD;
21-87 2.24e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172862  Cd Length: 106  Bit Score: 76.61  E-value: 2.24e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 627203014  21 RGLIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14386   3 RILRWFIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDPVP 69
PRK14387 PRK14387
membrane protein insertion efficiency factor YidD;
27-87 5.56e-19

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184655  Cd Length: 84  Bit Score: 74.98  E-value: 5.56e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 627203014  27 IQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14387  12 LRAYKLTLSPLIGRQCRFTPSCSEYTAAALKDHGPLKGSWLGLRRICRCNPFGGSGYDPPP 72
PRK14382 PRK14382
hypothetical protein; Provisional
 23-84 1.51e-18

hypothetical protein; Provisional


Pssm-ID: 172858  Cd Length: 68  Bit Score: 73.27  E-value: 1.51e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 627203014  23 LIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWD 84
Cdd:PRK14382   5 LIKFIKFYQKFISPLYPSSCRFYPTCSTYAILSIEKYGALKGSLKAFWRILRCNPFSKGGVD 66
PRK14373 PRK14373
hypothetical protein; Provisional
 23-87 7.91e-17

hypothetical protein; Provisional


Pssm-ID: 172849  Cd Length: 73  Bit Score: 69.26  E-value: 7.91e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 627203014  23 LIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14373   9 LLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKKYGAFKGGRLAIKRIARCHPFGGHGHDPVP 73
PRK14377 PRK14377
membrane protein insertion efficiency factor YidD;
26-87 1.03e-16

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172853  Cd Length: 104  Bit Score: 69.80  E-value: 1.03e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 627203014  26 VIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14377  13 LVHLYRWAISPFLGAPCRFFPTCSEYALVALKKHPLRKSLFLIAKRLLKCGPWCIGGIDLVP 74
PRK14372 PRK14372
membrane protein insertion efficiency factor YidD;
23-88 2.08e-16

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172848  Cd Length: 97  Bit Score: 68.81  E-value: 2.08e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 627203014  23 LIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIPE 88
Cdd:PRK14372   1 MIRGIRWYQQRISANTPPCCKYYPSCSNYAIEAIERFGAFKGGVLAVLRLLRCRPWSRGGIDDVPQ 66
PRK14370 PRK14370
hypothetical protein; Provisional
 23-87 8.97e-16

hypothetical protein; Provisional


Pssm-ID: 184651  Cd Length: 120  Bit Score: 67.57  E-value: 8.97e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 627203014  23 LIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14370  13 LLAFIHFYQRIISPILPARCRYYPTCSNYGKQAIAWHGVGKGSLLLLKRIGRCHPLGGHGIDFVP 77
PRK14375 PRK14375
membrane protein insertion efficiency factor YidD;
26-87 5.77e-15

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172851  Cd Length: 70  Bit Score: 64.24  E-value: 5.77e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 627203014  26 VIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPW-HRGGWDPIP 87
Cdd:PRK14375   2 LINLYRYCISPFIPARCRYYPTCSEYALEALKTHGILKGLYLTTRRLLRCHPLsKRDYYDLVP 64
PRK14390 PRK14390
hypothetical protein; Provisional
 26-88 3.31e-14

hypothetical protein; Provisional


Pssm-ID: 172866  Cd Length: 63  Bit Score: 62.33  E-value: 3.31e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 627203014  26 VIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIPE 88
Cdd:PRK14390   1 MISFYQKWFSPFFGPRCRFIPSCSSYGYEAITRHGPWKGGWLTLRRLSRCHPLTPCGCDPVPD 63
PRK14378 PRK14378
membrane protein insertion efficiency factor YidD;
24-87 4.11e-14

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237696  Cd Length: 103  Bit Score: 63.05  E-value: 4.11e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 627203014  24 IFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14378  17 IAVIRLYRRVVSPFYGDVCRYYPSCSAYGLEAVQEHGLIFGGYLAVWRVCRCHPWAEGGIDDVP 80
PRK14369 PRK14369
membrane protein insertion efficiency factor YidD;
23-87 1.72e-13

membrane protein insertion efficiency factor YidD;


Pssm-ID: 184650  Cd Length: 119  Bit Score: 62.00  E-value: 1.72e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 627203014  23 LIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14369   5 LLALIKLYQWTISPLLGPVCKYYPSCSHYGYTAIDRHGAIKGTALTAWRILRCNPWSLGGVDHVP 69
PRK14384 PRK14384
hypothetical protein; Provisional
 40-88 3.21e-13

hypothetical protein; Provisional


Pssm-ID: 172860  Cd Length: 56  Bit Score: 59.30  E-value: 3.21e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 627203014  40 ASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIPE 88
Cdd:PRK14384   2 SSCRFYPSCSCYAETALKRFGVIKGSGLTVWRLLRCHPFHPGGVDFVPE 50
PRK14385 PRK14385
membrane protein insertion efficiency factor YidD;
23-87 4.95e-10

membrane protein insertion efficiency factor YidD;


Pssm-ID: 172861  Cd Length: 96  Bit Score: 52.13  E-value: 4.95e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 627203014  23 LIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14385  14 LILLIKIYQNTLSKIVGFQCIYKPSCSNYALECLKKYNILTALILITLRIIRCNALFKGGNESLP 78
PRK14376 PRK14376
membrane protein insertion efficiency factor YidD;
26-87 1.62e-09

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237695  Cd Length: 176  Bit Score: 52.65  E-value: 1.62e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 627203014  26 VIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGGWDPIP 87
Cdd:PRK14376  48 LVRLYRAGWSGRNAGCCRFEPSCSAYALTAVRRHGGVRGGLLAVRRLLRCQPLSAGGYDPVP 109
PRK14374 PRK14374
membrane protein insertion efficiency factor YidD;
23-82 2.07e-06

membrane protein insertion efficiency factor YidD;


Pssm-ID: 237694  Cd Length: 118  Bit Score: 43.52  E-value: 2.07e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 627203014  23 LIFVIQVYRHMLSPLRPASCRFVPTCSQYAVDALTEYGLLRGSWLTMIRLAKCGPWHRGG 82
Cdd:PRK14374  13 FTASIRGYQRFFSAFTFSSCRFYPTCSNYALWLLCFENPLSAMGKIAIRILSCNPFCSGG 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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