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Conserved domains on  [gi|1012684394|gb|AMS38542|]
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flagellin, partial [Borrelia sp. HaeL2365]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12803 super family cl32829
flagellin; Provisional
 1-174 2.24e-90

flagellin; Provisional


The actual alignment was detected with superfamily member PRK12803:

Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 267.06  E-value: 2.24e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSSAQNVRTAEELGMQPSKINTPASLTGAQA 80
Cdd:PRK12803   90 MKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQPAKINTPASLSGSQA 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394  81 SWTLRVQVGANQDEAIAVNIFSTNVANLFGGEGV-QAAPAQEGAQQEGIQP------APAQGGVSSPINVTTAIDANASL 153
Cdd:PRK12803  170 SWTLRVHVGANQDEAIAVNIYAANVANLFSGEGAqQAAPVQEGAQQEGAQAapapaaAPAQGGVNSPVNVTTTVDANMSL 249

                         170       180
                  ....*....|....*....|.
gi 1012684394 154 TKIEDAIRMVTDQRANLGAFQ 174
Cdd:PRK12803  250 AKIENAIRMISDQRANLGAFQ 270
 
Name Accession Description Interval E-value
PRK12803 PRK12803
flagellin; Provisional
 1-174 2.24e-90

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 267.06  E-value: 2.24e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSSAQNVRTAEELGMQPSKINTPASLTGAQA 80
Cdd:PRK12803   90 MKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQPAKINTPASLSGSQA 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394  81 SWTLRVQVGANQDEAIAVNIFSTNVANLFGGEGV-QAAPAQEGAQQEGIQP------APAQGGVSSPINVTTAIDANASL 153
Cdd:PRK12803  170 SWTLRVHVGANQDEAIAVNIYAANVANLFSGEGAqQAAPVQEGAQQEGAQAapapaaAPAQGGVNSPVNVTTTVDANMSL 249

                         170       180
                  ....*....|....*....|.
gi 1012684394 154 TKIEDAIRMVTDQRANLGAFQ 174
Cdd:PRK12803  250 AKIENAIRMISDQRANLGAFQ 270
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 1-49 2.05e-10

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 55.81  E-value: 2.05e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSN 49
Cdd:pfam00669  88 MKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAG 136
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-92 3.77e-09

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 54.10  E-value: 3.77e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSSAQNVRTAEELGMQPSKINTPASLTGAQA 80
Cdd:COG1344    90 ARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQVDYQGDAGQRTAALGALDAALD 169

                          90
                  ....*....|...
gi 1012684394  81 SW-TLRVQVGANQ 92
Cdd:COG1344   170 NVsSARAELGARQ 182
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 1-32 2.43e-04

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 40.41  E-value: 2.43e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEI 32
Cdd:TIGR02550  89 ARELAVQAANGTLSDDDRKAIAKEIKQLLDQL 120
 
Name Accession Description Interval E-value
PRK12803 PRK12803
flagellin; Provisional
 1-174 2.24e-90

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 267.06  E-value: 2.24e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSSAQNVRTAEELGMQPSKINTPASLTGAQA 80
Cdd:PRK12803   90 MKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQPAKINTPASLSGSQA 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394  81 SWTLRVQVGANQDEAIAVNIFSTNVANLFGGEGV-QAAPAQEGAQQEGIQP------APAQGGVSSPINVTTAIDANASL 153
Cdd:PRK12803  170 SWTLRVHVGANQDEAIAVNIYAANVANLFSGEGAqQAAPVQEGAQQEGAQAapapaaAPAQGGVNSPVNVTTTVDANMSL 249

                         170       180
                  ....*....|....*....|.
gi 1012684394 154 TKIEDAIRMVTDQRANLGAFQ 174
Cdd:PRK12803  250 AKIENAIRMISDQRANLGAFQ 270
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 1-49 2.05e-10

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 55.81  E-value: 2.05e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSN 49
Cdd:pfam00669  88 MKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAG 136
PRK06819 PRK06819
FliC/FljB family flagellin;
2-100 2.57e-10

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 57.87  E-value: 2.57e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   2 KELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSsaqnvrtaeelgmqpskintpasltgaqas 81
Cdd:PRK06819   93 RELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAEDT------------------------------ 142

                          90
                  ....*....|....*....
gi 1012684394  82 wTLRVQVGANQDEAIAVNI 100
Cdd:PRK06819  143 -TMSIQVGANDGETIDINL 160
PRK12804 PRK12804
flagellin; Provisional
 1-174 4.20e-10

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 56.93  E-value: 4.20e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   1 MKELAVQSGN-GTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSSAQNVRTAEElgmqpskintpasltgaq 79
Cdd:PRK12804   90 VRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAPAAGTK------------------ 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394  80 aswTLRVQVGANQDEAIAVNIFSTNVANLfggeGVQAAPAQEGAQQEGIQPAPAQggvSSPINVTTAIDANASLTKIEDA 159
Cdd:PRK12804  152 ---SLTFQIGANAAQQLSVNIEAMSADAL----GVKDTDGTLVTGKSVSDIDVTK---FANAAAAADGGFDDQLKIVDGA 221

                         170
                  ....*....|....*
gi 1012684394 160 IRMVTDQRANLGAFQ 174
Cdd:PRK12804  222 IKQVSDQRSKLGAVQ 236
PRK08869 PRK08869
polar flagellin E;
1-174 4.96e-10

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 56.86  E-value: 4.96e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSSAQ------NVRTAEELGMQPSKINTPA- 73
Cdd:PRK08869   91 MRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKsfqigaNSGEAVSLDLKSMRSDAKIm 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394  74 ------SLTGAQASW---------TLRVQVGANQDEAIAVNIFS----TNVANLFGGE--GVQAAPAQEGAQQEGIQPAP 132
Cdd:PRK08869  171 ggvsydAEGGADKDWtvgagntdlNVSFDDKGGETQAITINAKAgddiEELATYINGQtdGVGASVSEDGKLQLFAAGQK 250

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1012684394 133 AQGGVS-------------------SPINVTTAIDANASLTKIEDAIRMVTDQRANLGAFQ 174
Cdd:PRK08869  251 VSGGVSfsgglaaelglgnatavtvDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQ 311
PRK12807 PRK12807
flagellin; Provisional
 1-172 1.45e-09

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 55.60  E-value: 1.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSSAQNVRTAEelgmQPSKINTPASLTGAqa 80
Cdd:PRK12807   90 MRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSI----SGAEISIETLDSSA-- 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394  81 swtlrvqvganQDEAIAVNIFSTNVANLfggegvqaapaqegaqqeGIQPAPAQGGVSSPINVTTAIDAnasltkIEDAI 160
Cdd:PRK12807  164 -----------TNQQITIKLANTTAEKL------------------GIDATTSNISISGAASALAAISA------LNTAL 208

                         170
                  ....*....|..
gi 1012684394 161 RMVTDQRANLGA 172
Cdd:PRK12807  209 NTVAGNRATLGA 220
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-92 3.77e-09

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 54.10  E-value: 3.77e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSSAQNVRTAEELGMQPSKINTPASLTGAQA 80
Cdd:COG1344    90 ARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQVDYQGDAGQRTAALGALDAALD 169

                          90
                  ....*....|...
gi 1012684394  81 SW-TLRVQVGANQ 92
Cdd:COG1344   170 NVsSARAELGARQ 182
PRK08026 PRK08026
FliC/FljB family flagellin;
2-48 4.96e-09

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 54.36  E-value: 4.96e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1012684394   2 KELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLS 48
Cdd:PRK08026   93 RELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLA 139
PRK12806 PRK12806
flagellin; Provisional
 1-148 5.55e-07

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 48.15  E-value: 5.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSnkssaqnvrtaeelgmqpskintpASLTGAQa 80
Cdd:PRK12806   92 MRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILD------------------------GSFSGAS- 146

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1012684394  81 swtlrVQVGANQDEAIAVNIFSTNVANLfGGEGVQAAPAQEGAQQEGIQpAPAQGGVSSPINVTTAID 148
Cdd:PRK12806  147 -----FQVGANSNQTINFSIGSIKASSI-GGIATATGTEVAGAAATDIT-IAIGGGAATSINSSANFT 207
PRK12802 PRK12802
flagellin; Provisional
 1-174 9.53e-06

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 44.48  E-value: 9.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSSaqnvrtaeelgmqpskintpasltgaqa 80
Cdd:PRK12802   92 MRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAG---------------------------- 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012684394  81 swTLRVQVGANQDEAIAVNIFSTNVANLfGGEGVQAAPAQEGAQqegiqpapaqggvsspiNVTTAIDANASLTKIEDAI 160
Cdd:PRK12802  144 --TMTFQVGANTGQSNQITFGLSASFDA-TGLGVGSGTLITGAD-----------------SAAAETNAQAAITAIDAAL 203

                         170
                  ....*....|....
gi 1012684394 161 RMVTDQRANLGAFQ 174
Cdd:PRK12802  204 QTINTTRADLGAAQ 217
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 2-42 1.09e-04

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 41.52  E-value: 1.09e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1012684394   2 KELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADqAQYN 42
Cdd:PRK07701   91 RELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIAN-TQYN 130
PRK12805 PRK12805
FliC/FljB family flagellin;
1-53 1.47e-04

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 41.01  E-value: 1.47e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSSA 53
Cdd:PRK12805   90 MRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATG 142
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 1-32 2.43e-04

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 40.41  E-value: 2.43e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEI 32
Cdd:TIGR02550  89 ARELAVQAANGTLSDDDRKAIAKEIKQLLDQL 120
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 1-32 2.91e-04

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 40.28  E-value: 2.91e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEI 32
Cdd:PRK08870   90 ARELVVQAGNGSLSDSDRQAIATELQGLRDQL 121
PRK12808 PRK12808
flagellin; Provisional
 1-52 8.00e-04

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 39.17  E-value: 8.00e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1012684394   1 MKELAVQSGNGTYSDSDRGSIQIEIEQLTDEINRVADQAQYNQMHMLSNKSS 52
Cdd:PRK12808   90 MRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSS 141
flgL PRK12717
flagellar hook-associated protein 3;
2-32 9.47e-04

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 38.95  E-value: 9.47e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1012684394   2 KELAVQSGNGTYSDSDRGSIQIEIEQLTDEI 32
Cdd:PRK12717   91 RELAVSAGNGGLTDADRKAIASELKQIEAQL 121
PRK06663 PRK06663
flagellar hook-associated protein 3;
2-32 9.42e-03

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 35.82  E-value: 9.42e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1012684394   2 KELAVQSGNGTYSDSDRGSIQIEIEQLTDEI 32
Cdd:PRK06663   92 RELAVQGANGTYQADDKKKIAKEIDELLEDL 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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