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Conserved domains on  [gi|663516530|gb|AIF06977|]
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hypothetical protein [uncultured marine group II/III euryarchaeote KM3_198_E02]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Vitellogenin_N super family cl44413
Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal ...
 26-111 8.55e-03

Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains.


The actual alignment was detected with superfamily member pfam01347:

Pssm-ID: 460170 [Multi-domain]  Cd Length: 582  Bit Score: 36.10  E-value: 8.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663516530   26 HQHHHSEQGNAEGYEELLYMVRRPYTPEMLDMIDAWmgLDKRDWREETQREVMLALYAIRYPDTLLLESFTDKARSDLRR 105
Cdd:pfam01347 340 WRQLYQNKPKYRRWPAFLDAVAQAGTGPALKFIKQW--IKSKKITGLEAAQVLAVLPHARYPTEEYMKALFELAESPEVK 417


                  ....*.
gi 663516530  106 LSAYLH 111
Cdd:pfam01347 418 NQPYLN 423
 
Name Accession Description Interval E-value
Vitellogenin_N pfam01347
Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal ...
 26-111 8.55e-03

Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains.


Pssm-ID: 460170 [Multi-domain]  Cd Length: 582  Bit Score: 36.10  E-value: 8.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663516530   26 HQHHHSEQGNAEGYEELLYMVRRPYTPEMLDMIDAWmgLDKRDWREETQREVMLALYAIRYPDTLLLESFTDKARSDLRR 105
Cdd:pfam01347 340 WRQLYQNKPKYRRWPAFLDAVAQAGTGPALKFIKQW--IKSKKITGLEAAQVLAVLPHARYPTEEYMKALFELAESPEVK 417


                  ....*.
gi 663516530  106 LSAYLH 111
Cdd:pfam01347 418 NQPYLN 423
 
Name Accession Description Interval E-value
Vitellogenin_N pfam01347
Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal ...
 26-111 8.55e-03

Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains.


Pssm-ID: 460170 [Multi-domain]  Cd Length: 582  Bit Score: 36.10  E-value: 8.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 663516530   26 HQHHHSEQGNAEGYEELLYMVRRPYTPEMLDMIDAWmgLDKRDWREETQREVMLALYAIRYPDTLLLESFTDKARSDLRR 105
Cdd:pfam01347 340 WRQLYQNKPKYRRWPAFLDAVAQAGTGPALKFIKQW--IKSKKITGLEAAQVLAVLPHARYPTEEYMKALFELAESPEVK 417


                  ....*.
gi 663516530  106 LSAYLH 111
Cdd:pfam01347 418 NQPYLN 423
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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