3T5V


Conserved Protein Domain Family
SAC3_GANP

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pfam03399: SAC3_GANP (this model, PSSM-Id:281402 is obsolete and has been replaced by 460911)
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SAC3/GANP/Nin1/mts3/eIF-3 p25 family
This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localization of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits.
Statistics
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PSSM-Id: 281402
Aligned: 53 rows
Threshold Bit Score: 170.08
Created: 12-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3T5V_A       3 PLPSDVRPPHILVKTLDYIVDNLLT---------TLPE-----------SEGFLWDRMRSIRQDFTYQNYSGPEAVDCNE 62   baker's yeast
Q16UK1     153 PLALELRSEKGLELSMSYLLLRIADlcde--edvNLSD-----------WFHFVWDRTRGIRKDITQQELCSVRAVRLVE 219  yellow fever mos...
Q29RC7     107 TRASDLRPPSVLLKTVSYLVDEVATsst----fqPWTE-----------VYSFVFDRLRSVRQDMIIQRVSGPDCVAVLE 171  zebrafish
A6H687     136 PPPSLLRPPPVLLATVRYLAGEVAGrg-----dvSCAE-----------VASFVADRLRAVRLDLSLQGVDDADAATVLE 199  house mouse
Q6GP38      37 SSPYDLRPPAVLLKTVHYLLMKVWDsvne-mdlgKLSE-----------AYSFVFDRLRAVRQDMTVQRVSGLSGAVVLE 104  African clawed frog
Q17AD3      59 PKHWEIRTVAALKRTVEYLLTEIMQdd-----rrSYNF-----------RYEFIFDRLRAVRQEVVMQNLSAKDTLDILE 122  yellow fever mos...
Q29EF1      56 PKGEDMRTMECLTRTVEYLLKEIVMdn-----rmPYRM-----------AYDFIFDRLRAVRREIVIQMFDAQQTAKLLE 119  Drosophila pseud...
Q8SXJ3      56 PMPKEMRTEAALTKTVEYLLKDIILdt-----rkPYNV-----------AYDFIFDRLRAVRREIVIQMYDASQKICLLE 119  fruit fly
Q86IW7     434 IPPDEIRPVHVLLKVMNYITHEISDqeslqrpgvTFSE-----------IQNFIRDRTRSIRQDLTSQHSKDGISIDIHE 502  Dictyostelium di...
XP_555482  149 PLPHELRSQQALGRTMHFLLTHLAD---------LCNDdegegggnvsdWFHYIWDRTRGIRKDITQQDLCSVTVVELVE 219  Anopheles gambia...
3T5V_A      63 RIVRIHLLILHIMVKSNV--E-FSLQQELEQLHKSLITLSEIYDDv-rSSGGTc--pNEAE----FRAYALLSKIR-DPQ 131  baker's yeast
Q16UK1     220 QCARFHIHCAARLVAEDPs-V-FDQKINTENMTKCLQSLKYMYHDl-gLKGIRc--pNEAE----FRAYVVLLNLN-DGN 289  yellow fever mos...
Q29RC7     172 KSVRFLLYSSYRLCGQPLq-L-YDPRINDTHLQESLSWLLESYSE-----GKHq---HQEE----FQALALLYNLG-SAQ 236  zebrafish
A6H687     200 AALATLLAVVARVRPEETrgA-ADPVLLQTQVQEGFGSLRRCYAr---GKGPYp---RQAA----FQGLFLLYNLG-SVE 267  house mouse
Q6GP38     105 ASLGFLLCAPYLVRHLPVe-S-YDEVLHATQVRESFAELMECYKEdvrNP-------REAE----FQALLLLYDLG-NLD 170  African clawed frog
Q17AD3     123 PIVCFLSYSAYQLCESHIs-E-FDPKICNTHLQECLKKVLRSYDEleqESASYiq-nRRTR----MEGLYLAFNLG-SSE 194  yellow fever mos...
Q29EF1     120 PIVMFLAYSRYRLCDEPIe-L-FDAKICDQHLQDCLTGVLRCYKTldeDESKSrhtiRDIQrrcfIESVYQVFNLG-CPE 196  Drosophila pseud...
Q8SXJ3     120 PIVMFLAYSRYRLCEEPIe-K-FDLKICNQHLQECLTGVLCCYEEledLESSReptvRELErrcfIESLYQLFNLG-SPE 196  fruit fly
Q86IW7     503 RCTRFHIVSHHYLCELPDk-D-FNAFQNREQLNNCLTSLKQFYNDhfkQSNGLvt-tNEPE----FRSYYILNNLEnNYD 575  Dictyostelium di...
XP_555482  220 QCTRFHIHCAARLVSEDP--SvFDQKINTENMTKCLQTLKYMYTDl-gQRGQRc--pAEAE----FRAYMVLLYLN-DGN 289  Anopheles gambia...
3T5V_A     132 YDENIQRLPKHIFQDKLVQMALCFRRVISNsaytergfvktenclNFYARFFQLMqsPSLPLLMGFFLQMHLTDIRFYAL 211  baker's yeast
Q16UK1     290 FLWEVKQLAGDIMHSKEIRFALQVYFALEG---------------NNYARFFRLV--RQTSYMNACILLRYFNQIRTRAL 352  yellow fever mos...
Q29RC7     237 AVQHVLALPERIRSSLAVRLALEVSRAHME---------------RNPVRLLRLA--KKLDFMQVCAVHRHLLPCRRDLL 299  zebrafish
A6H687     268 ALQEVLQLPAALRACPPLQAALAVDAAFRE---------------DNHARLFRLL--RTLPYLQSCAVQEHIGYARRKAL 330  house mouse
Q6GP38     171 TMNRALKLKPDIEVSPQVCLAMAVNRAFLE---------------CNWVRLFRLL--HKLDCLQSCAIYHHLSMCRDRNL 233  African clawed frog
Q17AD3     195 ALTRGINLPKNIR--KRLSLQLSSNIEYLR---------------HNYHRVLISL--QKLPPLEAALAVLKIPTIRQQLL 255  yellow fever mos...
Q29EF1     197 SMERALTLPDHVRQDPTFKICFQMSLFYHQ---------------GNLYRVLMGL--PKLPHILCALAATKLQTMRRRVL 259  Drosophila pseud...
Q8SXJ3     197 SFTRALTLPDYVRRDATFKLCFGICLAFQQ---------------GNLYRVLMGV--PQLPHILCAVAAAKLQVIRRSLL 259  fruit fly
Q86IW7     576 LVSYMIDIPRSIFHHPFIQYAIEVWKAYRS---------------DNYSRFFMLT--LSGTYLQMCILHRYFTHVRKIAI 638  Dictyostelium di...
XP_555482  290 FLWELRQLPEAIIHSKEIQFALSVYFALEE---------------NNFVRFFQLV--RSTTYMNACILLRYFTQVRQKAL 352  Anopheles gambia...
3T5V_A     212 RALSHTLNK-K-H---KPIPFIYLENMLLF 236  baker's yeast
Q16UK1     353 EIMLRAYTY-R-Tp--ASFSLEHLTDLLAF 378  yellow fever mosquito
Q29RC7     300 LLYSHGHSS-R-N---YRYPLQRLAQLLCL 324  zebrafish
A6H687     331 ARLSRALSTpK-G---QTLPLDFIEHFLAL 356  house mouse
Q6GP38     234 RTLAHAYSS-R-N---CRFPLDLLTKLMAV 258  African clawed frog
Q17AD3     256 LRFSSAFQS-K-V---LSVPLEWIGHVLMY 280  yellow fever mosquito
Q29EF1     260 QMFTHAY-N-K-Q---FDVPGSYLLRVMLI 283  Drosophila pseudoobscura
Q8SXJ3     260 QIFTHAYNN-K-Q---LTMPVPYLLRLLLF 284  fruit fly
Q86IW7     639 KRIARSYRA-P-KqptTLFPIQDFNNILMF 666  Dictyostelium discoideum
XP_555482  353 EILRKAYAV-RsT---ASFSLEYMTRILGF 378  Anopheles gambiae str. PEST
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