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Type the full name of an identifier to look for (a function name, variable name, typedef, etc).
Matches are case-sensitive. As a convenience,extra N line numbers denote case-insensitive occurrences..

Definitions for AddDefaultKey

Type	Member of	File	Line
function prototype or declaration	CArgDescriptions	/include/corelib/ncbiargs.hpp	734
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	99
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	148
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	154
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	332
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	339
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	362
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	502
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	528
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	538
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	793
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	934
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1018
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1027
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1062
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1084
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1090
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1098
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1144
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1413
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1415
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1417
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1439
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1467
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1480
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1482
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1489
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1492
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1499
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1614
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1627
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1653
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1660
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1667
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1674
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1689
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1693
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1698
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1710
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1718
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	1950
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	2012
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	2016
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	2047
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	2653
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	2993
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	3139
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	3150
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	3337
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	3406
function prototype or declaration		/src/algo/blast/blastinput/blast_args.cpp	3422
function prototype or declaration		/src/algo/blast/blastinput/demo/blastinput_demo.cpp	77
function prototype or declaration		/src/algo/blast/blastinput/demo/blastinput_demo.cpp	80
function prototype or declaration		/src/algo/blast/blastinput/magicblast_args.cpp	82
function prototype or declaration		/src/algo/blast/blastinput/magicblast_args.cpp	92
function prototype or declaration		/src/algo/blast/blastinput/magicblast_args.cpp	97
function prototype or declaration		/src/algo/blast/blastinput/magicblast_args.cpp	103
function prototype or declaration		/src/algo/blast/blastinput/magicblast_args.cpp	152
function prototype or declaration		/src/algo/blast/blastinput/magicblast_args.cpp	168
function prototype or declaration		/src/algo/blast/blastinput/rpsblast_args.cpp	50
function prototype or declaration		/src/algo/blast/blastinput/rpsblast_args.cpp	58
function prototype or declaration		/src/algo/blast/vdb/blastn_vdb_args.cpp	79
function prototype or declaration		/src/algo/winmask/win_mask_config.cpp	66
function prototype or declaration		/src/algo/winmask/win_mask_config.cpp	70
function prototype or declaration		/src/algo/winmask/win_mask_config.cpp	127
function prototype or declaration		/src/algo/winmask/win_mask_config.cpp	167
function prototype or declaration		/src/app/blast/blast_formatter.cpp	135
function prototype or declaration		/src/app/blast/seedtop_app.cpp	120
function prototype or declaration		/src/app/blast/seedtop_app.cpp	132
function prototype or declaration		/src/app/blastdb/blastdb_aliastool.cpp	190
function prototype or declaration		/src/app/blastdb/blastdb_convert.cpp	129
function prototype or declaration		/src/app/blastdb/blastdb_convert.cpp	142
function prototype or declaration		/src/app/blastdb/blastdb_path.cpp	80
function prototype or declaration		/src/app/blastdb/blastdb_path.cpp	83
function prototype or declaration		/src/app/blastdb/blastdb_path.cpp	91
function prototype or declaration		/src/app/blastdb/blastdbcmd.cpp	912
function prototype or declaration		/src/app/blastdb/blastdbcmd.cpp	915
function prototype or declaration		/src/app/blastdb/blastdbcmd.cpp	1042
function prototype or declaration		/src/app/blastdb/blastdbcp.cpp	117
function prototype or declaration		/src/app/blastdb/blastdbcp.cpp	124
function prototype or declaration		/src/app/blastdb/makeblastdb.cpp	225
function prototype or declaration		/src/app/blastdb/makeclusterdb.cpp	398
function prototype or declaration		/src/app/blastdb/makeclusterdb.cpp	401
function prototype or declaration		/src/app/blastdb/makeclusterdb.cpp	405
function prototype or declaration		/src/app/blastdb/makeprofiledb.cpp	409
function prototype or declaration		/src/app/blastdb/makeprofiledb.cpp	427
function prototype or declaration		/src/app/blastdb/makeprofiledb.cpp	431
function prototype or declaration		/src/app/blastdb/makeprofiledb.cpp	436
function prototype or declaration		/src/app/blastdb/makeprofiledb.cpp	449
function prototype or declaration		/src/app/blastdb/makeprofiledb.cpp	454
function prototype or declaration		/src/app/blastdb/makeprofiledb.cpp	463
function prototype or declaration		/src/app/blastdb/makeprofiledb.cpp	468
function prototype or declaration		/src/app/blastvdb/blast_formatter_vdb.cpp	133
function prototype or declaration		/src/app/dustmasker/dust_mask_app.cpp	86
function prototype or declaration		/src/app/dustmasker/dust_mask_app.cpp	89
function prototype or declaration		/src/app/dustmasker/dust_mask_app.cpp	102
function prototype or declaration		/src/app/dustmasker/dust_mask_app.cpp	105
function prototype or declaration		/src/app/segmasker/segmasker.cpp	111
function prototype or declaration		/src/app/segmasker/segmasker.cpp	114
function prototype or declaration		/src/app/segmasker/segmasker.cpp	117
function prototype or declaration		/src/app/segmasker/segmasker.cpp	128
function prototype or declaration		/src/app/vecscreen/vecscreen_app.cpp	76
function prototype or declaration		/src/app/vecscreen/vecscreen_app.cpp	81
function prototype or declaration		/src/app/vecscreen/vecscreen_app.cpp	89
function prototype or declaration		/src/app/vecscreen/vecscreen_app.cpp	93
function definition	CArgDescriptions	/src/corelib/ncbiargs.cpp	2441

106 declarations in 22 files.

References to AddDefaultKey

File	Line
/include/corelib/ncbiargs.hpp	734
/src/algo/align/advanced_cleanup/advanced_cleanup.cpp	74 79 99
/src/algo/align/advanced_cleanup/demo/demo_align_cleanup.cpp	78 86 96 107
/src/algo/align/contig_assembly/demo/demo_contig_assembly.cpp	75 79 82 85
/src/algo/align/mergetree/app/merge_tree_app.cpp	231 232 233 234
/src/algo/align/ngalign/app/ngalign_app.cpp	201 245
/src/algo/align/prosplign/compartments.cpp	441 449 459 466 474 486 492 499 513
/src/algo/align/prosplign/prosplign.cpp	63 113 119 125 131 137 143 149 155 161 199 205 212 225 231 238 245 252 260 267 275 282 290 296 303 313 321 331 338
/src/algo/align/splign/splign_cmdargs.cpp	51 114 124 138 148 156 165 172 180 189 196 205
/src/algo/align/splign/unit_test/unit_test_splign.cpp	82 108
/src/algo/align/util/demo/demo_genomic_compart.cpp	80 85
/src/algo/align/util/demo/demo_score_builder.cpp	69 74
/src/algo/blast/blastinput/blast_args.cpp	99 148 154 332 339 362 502 528 538 793 934 1018 1027 1062 1084 1090 1098 1144 1413 1415 1417 1439 1467 1480 1482 1489 1492 1499 1614 1627 1653 1660 1667 1674 1689 1693 1698 1710 1718 1950 2012 2016 2047 2653 2993 3139 3150 3337 3406 3422
/src/algo/blast/blastinput/demo/blastinput_demo.cpp	77 80 89
/src/algo/blast/blastinput/magicblast_args.cpp	82 92 97 103 152 168
/src/algo/blast/blastinput/rpsblast_args.cpp	50 58
/src/algo/blast/dbindex/makeindex/mkindex_app.cpp	76 84 88 121
/src/algo/blast/dbindex_search/srsearch/srsearch_app.cpp	327 331 338 342 346 350
/src/algo/blast/gumbel_params/demo/gumbelparams_app.cpp	120 123 127 131 135 138 142 146 150 154 158
/src/algo/blast/proteinkmer/demo/ckblastindex.cpp	87
/src/algo/blast/proteinkmer/demo/mkkblastindex.cpp	71 76 79 83 87 91 95 102
/src/algo/blast/vdb/blastn_vdb_args.cpp	79
/src/algo/cobalt/demo/clusterer_app.cpp	92 95 101 107 111 117
/src/algo/cobalt/demo/cobalt_app.cpp	171 174 179 187 219 225 229 234 238 248 251 255 259 263 267 276 279 283 288
/src/algo/cobalt/demo/hyperclust.cpp	78 82 87 90 93 96 99 102 105 110 113
/src/algo/gnomon/aligncollapser.cpp	205 209 213 217 221 225 235 239
/src/algo/gnomon/annot.cpp	847 849 850 852 855 858 862
/src/algo/gnomon/chainer.cpp	7432 7435 7449 7458 7462 7465 7468 7472 7477 7480 7483 7486 7489 7492 7494 7496 7499 7503 7506 7509 7512 7515 7521 7524 7528 7531 7535 7538 7541 7544 7548 7553
/src/algo/gnomon/demo/local_finder.cpp	66 71
/src/algo/gnomon/variations.cpp	750 751 752 753 754 755 756
/src/algo/ms/omssa/demo/readresult.cpp	67
/src/algo/ms/omssa/omssaapp.cpp	116 120 123 125 127 129 131 133 135 137 139 141 143 145 147 149 151 154 156 158 160 162 164 167 171 175 179 181 183 185 188 191 194 197 200 203 206 209 212 215 218 221 224 228 233 236 240 244 248 252 256 260 264 268 272 276 280 284 288 292 296 300 304 308 312 316 325 329 333
/src/algo/ms/omssa/omssamerge.cpp	96
/src/algo/seqqa/demo/demo_seqtest.cpp	68 71
/src/algo/sequence/demo/adapter_search.cpp	85 93 111 118
/src/algo/sequence/demo/cpgdemo.cpp	60 63 66 69
/src/algo/sequence/demo/demo_gene_model.cpp	65 70 74
/src/algo/sequence/demo/xcompareannotsdemo.cpp	749 763 784 795 812
/src/algo/winmask/demo/win_mask_app.cpp	77 81 85 88 91 93 95 97 100 103 117 120 123 126 129 132 135 139 142 145 148 151 154 157 162 165 168 173 176 179 182 185 188
/src/algo/winmask/win_mask_config.cpp	66 70 74 78 83 86 127 167 170 173 176 187 197 202 205
/src/app/agp_validate/agp_validate.cpp	218 246
/src/app/agpconvert/agpconvert.cpp	215 270
/src/app/annotwriter/annotwriter.cpp	234 256 262 268 289
/src/app/asn2asn/asn2asn.cpp	404 407
/src/app/asn2fasta/asn2fasta.cpp	213
/src/app/asn2flat/asn2flat.cpp	282
/src/app/asn_cache/asn_cache_test.cpp	131 136
/src/app/asn_cache/concat_seqentries.cpp	88
/src/app/asn_cache/dump_seqids.cpp	78
/src/app/asn_cache/prime_cache.cpp	290 303 329 365 384 392 397
/src/app/asn_cache/sub_cache_create.cpp	767
/src/app/asn_cache/walk_cache_test.cpp	87 92
/src/app/asn_cleanup/asn_cleanup.cpp	172
/src/app/asnval/asnval.cpp	232 235 244 253 270 297
/src/app/biosample_chk/biosample_chk.cpp	332 337 352
/src/app/blast/blast_formatter.cpp	135
/src/app/blast/seedtop_app.cpp	120 132
/src/app/blastdb/blastdb_aliastool.cpp	190
/src/app/blastdb/blastdb_convert.cpp	129 142
/src/app/blastdb/blastdb_path.cpp	80 83 91
/src/app/blastdb/blastdbcheck.cpp	161 189
/src/app/blastdb/blastdbcmd.cpp	912 915 1010 1042 1047 1102 1126
/src/app/blastdb/blastdbcp.cpp	117 124 212
/src/app/blastdb/convert2blastmask.cpp	154 158 162
/src/app/blastdb/makeblastdb.cpp	225 228 298 304
/src/app/blastdb/makeclusterdb.cpp	398 401 405 419
/src/app/blastdb/makeprofiledb.cpp	409 420 427 431 436 449 454 463 468
/src/app/blastfmt/guide_tree_app.cpp	93 103 107 115 146 152
/src/app/blastvdb/blast_formatter_vdb.cpp	133
/src/app/blastvdb/blast_vdb_cmd.cpp	661 684 713
/src/app/bsdiff/bsdiff.cpp	305 312 319 326 333 340
/src/app/compart/compart.cpp	63 66 69 76 81 87 93 97 102 117
/src/app/compart/compartp.cpp	48
/src/app/convert_seq/convert_seq.cpp	98 103 123
/src/app/dblb/ncbi_dblb_cli.cpp	146 150 164 304
/src/app/discrepancy_report/asndisc.cpp	135 140
/src/app/dustmasker/dust_mask_app.cpp	86 89 92 95 98 102 105
/src/app/feat_import/feat_import.cpp	96 104 111 122
/src/app/flat2asn/flat2asn.cpp	224 230 231 242 245 246 247 248 249 250 251 253 255 256 257 258 259 260 261 262 266 269 270 271 272 273 274 277 279 280 282 283 284
/src/app/formatguess/formatguess.cpp	121 139
/src/app/gap_stats/gap_stats.cpp	403 411 429 437 450 468 479
/src/app/gi2taxid/gi2taxid.cpp	60
/src/app/gnomon/compact_sam.cpp	589 592 595 598 603
/src/app/gnomon/exon_selector.cpp	867 868 869
/src/app/grid/test/test_netschedule_stress.cpp	98
/src/app/hfilter/hitfilter_app.cpp	79 85 89 93 97 107 128 131 137 146
/src/app/hgvsreader/hgvsreader.cpp	51 59
/src/app/id1_fetch/id1_fetch.cpp	137 147 174 242
/src/app/id1_fetch/id1_fetch_simple.cpp	101 109 122
/src/app/id2_fetch/id2_fetch_simple.cpp	171 179 204 217
/src/app/idfetch/idfetch.cpp	164 169
/src/app/idmapper/idmapper.cpp	118 129
/src/app/lds2_indexer/lds2_indexer.cpp	110
/src/app/multireader/multireader.cpp	315 323 330 338 346 372 385 392 398 411 417 460 467 534 610 617 624 636 666
/src/app/ncbi_encrypt/ncbi_encrypt.cpp	74 76
/src/app/netstorage/utils/netstorage_gc.cpp	81
/src/app/nmer_repeats/nmer_repeats.cpp	88 94 100
/src/app/nw_aligner/nwa.cpp	54 67 75 81 86 91 96 101 105
/src/app/objextract/objextract.cpp	82 87 94 103 108 115
/src/app/objmgr/demo/objmgr_demo.cpp	191 194 199 205 325 353 368 421 428
/src/app/objmgr/test/objmgr_perf_test.cpp	162 167 207
/src/app/pub_report/pub_report.cpp	94 95 96
/src/app/pubseq_gateway/client/psg_client_app.cpp	184 217 225 226 270 275 276 282 284 289 290 297 298 301 308
/src/app/read_blast_result/read_blast_result.cpp	110 145 151 157 163 168 173 178 183 188 193 198
/src/app/segmasker/segmasker.cpp	111 114 117 128 138 141 144
/src/app/speedtest/speedtest.cpp	136 141 148
/src/app/splign/splign_app.cpp	165 177 190
/src/app/split_cache/split_cache.cpp	235 241 248 266
/src/app/srcchk/srcchk.cpp	145
/src/app/ssub_fork/ssub_fork.cpp	133 153 162 176 188
/src/app/streamtest/streamtest.cpp	138 145 163 194 210 252 258 264 270
/src/app/sub_fuse/sfuse.cpp	74
/src/app/table2asn/table2asn.cpp	208 213 218 251 264 272
/src/app/tableval/tableval.cpp	146 154
/src/app/vecscreen/vecscreen_app.cpp	76 81 85 89 93
/src/app/wig2table/wig2table.cpp	438 443 447 455 471
/src/build-system/project_tree_builder/proj_builder_app.cpp	526
/src/cgi/test/test_multipart_cgi.cpp	60
/src/connect/test/test_ncbi_linkerd_mt.cpp	109 113 116 119 122 126 129 133 136
/src/connect/test/test_ncbi_namedpipe.cpp	163 167
/src/connect/test/test_ncbi_namedpipe_connector.cpp	109 113
/src/connect/test/test_ncbi_namerd_mt.cpp	73 76 79 82
/src/connect/test/test_ncbi_service_cxx_mt.cpp	72
/src/connect/test/test_ncbi_trigger.cpp	125
/src/connect/test/test_server.cpp	318 322 326 330 334 347
/src/connect/test/test_server_listeners.cpp	261
/src/connect/test/test_threaded_client.cpp	127 133 136 139 143
/src/connect/test/test_threaded_server.cpp	106 109 113
/src/corelib/jaeger/test/test_jaeger.cpp	68 70 75
/src/corelib/ncbiargs.cpp	2244 2441
/src/corelib/opentelemetry/test/test_opentelemetry.cpp	72 73 76
/src/corelib/test/test_interprocess_lock.cpp	336 338
/src/corelib/test/test_ncbi_process.cpp	241 244 246
/src/corelib/test/test_ncbiargs.cpp	73 83 481
/src/corelib/test/test_ncbiargs_sample.cpp	94
/src/corelib/test/test_ncbidiag_perf.cpp	103 106
/src/corelib/test/test_ncbithr.cpp	782 790 798 806
/src/corelib/test/test_strdbl.cpp	302 308 311 320 325
/src/corelib/test/test_sub_reg.cpp	70 73
/src/corelib/test_mt.cpp	470 478 487
/src/ctools/test/test_asn_converter.cpp	70 76 80
/src/dbapi/driver/dbapi_driver_sample_base.cpp	90 95 100 105
/src/dbapi/driver/ftds100/freetds/tds/unittests/test-tds100.cpp	65
/src/dbapi/driver/ftds14/freetds/tds/unittests/test-tds14.cpp	65
/src/dbapi/driver/mysql/samples/mysql_lang.cpp	69 74
/src/dbapi/driver/samples/dbapi_sample_base.cpp	179 183 189 193 201
/src/dbapi/driver/samples/dbapi_testspeed/dbapi_testspeed.cpp	121 128 141
/src/dbapi/lang_bind/python/tests/python_ncbi_dbapi_test.cpp	117 121 127 131 134
/src/dbapi/simple/test/sdbapi_test_mt_pooling.cpp	70 75 79 84 86 88 91
/src/dbapi/simple/test/sdbapi_unit_test_common.cpp	219 222 226 230 233 237
/src/dbapi/test/dbapi_svc_test.cpp	1282
/src/dbapi/test/dbapi_unit_test_common.cpp	606 610 615 619 622 633
/src/gui/app/ini2reg/ini2reg.cpp	53 58
/src/gui/app/project_tools/gbproject_tool.cpp	136
/src/gui/cache/test/test_sqlite_cache.cpp	75
/src/gui/objutils/test/test_density_map.cpp	67 70
/src/gui/utils/test/test_intersect.cpp	78
/src/gui/utils/test/testmath.cpp	81
/src/gui/widgets/data/demo/make_score_method.cpp	66 78
/src/misc/clog/app/ncbi_applog.cpp	316 318 320 322 325 330 335 338 341 358 367 386 388 390 392 394 396 400 421 423 425 430 450 457 462 477 479 484 503 505 510 568 571 593 597 623 644 662 667
/src/misc/eutils_client/test/test_eutils_client.cpp	98 123
/src/misc/hgvs/test/hgvs2variation.cpp	91 99 121
/src/misc/hgvs/test/test_hgvs_parser_app.cpp	154 162
/src/objects/dbsnp/primary_track/test/snp_ptis_test.cpp	75
/src/objects/entrez2/demo/entrez2client.cpp	132 149 152 156
/src/objects/general/test/test_userfield.cpp	78 81
/src/objects/genomecoll/gc_cli/gc_cli.cpp	189 190 238
/src/objects/id1/test/test_id1_client.cpp	73 77
/src/objects/seq/unit_test/unit_test_so_map.cpp	93 99 105 111
/src/objects/seqtable/test/test_seq_table.cpp	132
/src/objects/taxon1/unit_test/taxon1_unit_test.cpp	64
/src/objmgr/test/test_objmgr_sv.cpp	87 90 93 96 99 102 106
/src/objmgr/test/test_seqmap_switch.cpp	68 71
/src/objmgr/util/unit_test/unit_test_feature_edit.cpp	198
/src/objtools/alnmgr/demo/aln_build_app.cpp	97 102 108 115 122 128 135 150 166
/src/objtools/alnmgr/demo/aln_test_app.cpp	100 104 109
/src/objtools/alnmgr/demo/alnmrg.cpp	134 139 149 155 165 170 175 180 185 190 195 201 206 211 233 239 244 249 254 280 285 290
/src/objtools/alnmgr/demo/alnvwrapp.cpp	116 121 164 169 174 179 184
/src/objtools/alnmgr/demo/pairwise_aln_app.cpp	102 107 113 118
/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp	294 297 326 334
/src/objtools/cddalignview/demo/cav_main.cpp	61 65
/src/objtools/cleanup/test/test_basic_cleanup.cpp	133 136
/src/objtools/cleanup/test/test_fix_feature_ids.cpp	153
/src/objtools/data_loaders/genbank/test/bulkinfo_tester.cpp	1075
/src/objtools/data_loaders/genbank/test/test_bulkinfo.cpp	141 150
/src/objtools/data_loaders/genbank/test/test_bulkinfo_mt.cpp	124 133
/src/objtools/data_loaders/genbank/test/test_reader_gicache.cpp	56 59 62
/src/objtools/data_loaders/genbank/test/test_reader_id1.cpp	56 59 62
/src/objtools/data_loaders/lds2/test/test_lds2.cpp	95
/src/objtools/edit/unit_test/unit_test_rna_edit.cpp	235 239
/src/objtools/edit/unit_test/unit_test_seq_edit.cpp	264 269 281
/src/objtools/eutils/efetch/test/test_pubmed_article.cpp	66 69
/src/objtools/format/flat_file_config.cpp	514 522 529 536 544 582 651 690
/src/objtools/import/unit_test/unit_test_import.cpp	194 200 206
/src/objtools/readers/app/ace2asn.cpp	77 82 87 92 97 102 107 112 117 122 128
/src/objtools/readers/test/test_fasta_round_trip.cpp	61
/src/objtools/readers/test/test_source_mod_parser.cpp	84 88
/src/objtools/readers/unit_test/unit_test_5colftblreader.cpp	193 197
/src/objtools/readers/unit_test/unit_test_agp_converter.cpp	280
/src/objtools/readers/unit_test/unit_test_agp_seq_entry.cpp	241
/src/objtools/readers/unit_test/unit_test_alnreader.cpp	370 375 387
/src/objtools/readers/unit_test/unit_test_bedreader.cpp	247 251
/src/objtools/readers/unit_test/unit_test_fasta_reader.cpp	403 407
/src/objtools/readers/unit_test/unit_test_gff3reader.cpp	258 262
/src/objtools/readers/unit_test/unit_test_gff3reader_genbank.cpp	253 257
/src/objtools/readers/unit_test/unit_test_gtfreader.cpp	258 262
/src/objtools/readers/unit_test/unit_test_gvfreader.cpp	250 254
/src/objtools/readers/unit_test/unit_test_microarrayreader.cpp	248 252
/src/objtools/readers/unit_test/unit_test_mod_adder.cpp	399 403
/src/objtools/readers/unit_test/unit_test_mod_handler.cpp	323 327
/src/objtools/readers/unit_test/unit_test_pslreader.cpp	252 256
/src/objtools/readers/unit_test/unit_test_title_parser.cpp	272 276
/src/objtools/readers/unit_test/unit_test_ucscreader.cpp	252 256
/src/objtools/readers/unit_test/unit_test_vcfreader.cpp	247 251
/src/objtools/readers/unit_test/unit_test_wigreader.cpp	260 264
/src/objtools/readers/unit_test/unit_test_wigreader_raw.cpp	259 263
/src/objtools/test/objmgr/seqvec_bench.cpp	98
/src/objtools/test/objmgr/test_annot_ci.cpp	205 209
/src/objtools/test/objmgr/test_objmgr_data.cpp	819 822 827
/src/objtools/test/objmgr/test_objmgr_data_mt.cpp	675 685 698 704
/src/objtools/test/objmgr/test_seqvector_ci.cpp	97 101 104
/src/objtools/test/objmgr/util/test_feat_overlap.cpp	69
/src/objtools/validator/test/test_validator.cpp	140 164 167
/src/objtools/validator/valid_cmdargs.cpp	62
/src/objtools/variation/process/analyze-shift.cpp	95 96
/src/objtools/variation/test/reference_allele_fix/test-reference_allele_fix.cpp	93
/src/objtools/variation/test/shift/test-shift.cpp	105 113
/src/objtools/writers/unit_test/unit_test_alnwriter.cpp	290 294
/src/objtools/writers/unit_test/unit_test_bedgraphwriter.cpp	320 324
/src/objtools/writers/unit_test/unit_test_bedwriter.cpp	320 324
/src/objtools/writers/unit_test/unit_test_gff3flybasewriter.cpp	331 335
/src/objtools/writers/unit_test/unit_test_gff3writer.cpp	389 393
/src/objtools/writers/unit_test/unit_test_gtfwriter.cpp	320 324
/src/objtools/writers/unit_test/unit_test_pslwriter.cpp	289 293
/src/objtools/writers/unit_test/unit_test_srcwriter.cpp	323 327
/src/objtools/writers/unit_test/unit_test_ucscwriter.cpp	320 324
/src/objtools/writers/unit_test/unit_test_vcfwriter.cpp	320 324
/src/objtools/writers/unit_test/unit_test_wigwriter.cpp	287 291
/src/sample/app/alnmgr/alnmgr_sample.cpp	84 89 94
/src/sample/app/asn/asn_sample.cpp	62 67
/src/sample/app/basic/basic_sample.cpp	90
/src/sample/app/blast/blast_demo.cpp	92 97 100 103 106 109 112
/src/sample/app/blast/blast_sample.cpp	120
/src/sample/app/blast/remote_blast_demo.cpp	95 98 101 104 107 110 113 116 119
/src/sample/app/blast/vsrun_sample.cpp	83
/src/sample/app/cgi/fcgi_mt_sample.cpp	121
/src/sample/app/dbapi/dbapi_advanced_features.cpp	72 75 80 84
/src/sample/app/dbapi/dbapi_simple.cpp	99 104 110
/src/sample/app/eutils/eutils_sample.cpp	131 166
/src/sample/app/netcache/netcache_client_sample.cpp	72
/src/sample/app/objects/objects_sample.cpp	74 78 83 87
/src/sample/app/objmgr/feattree_sample.cpp	106 110 114
/src/sample/app/psg_client/psg_client_sample.cpp	123 124
/src/sample/app/sdbapi/sdbapi_advanced_features.cpp	64
/src/sample/app/sdbapi/sdbapi_simple.cpp	107 112 118
/src/sample/app/serial/bss_info.cpp	404 408
/src/sample/app/serial/seqannot_splicer.cpp	463 467 472 476 481 485
/src/serial/datatool/datatool.cpp	110
/src/serial/test/test_io/test_serial_io.cpp	1375 1378 1383
/src/sra/app/bam2graph/bam2graph.cpp	133
/src/sra/data_loaders/csra/test/test_csra_loader_mt.cpp	110 118 122
/src/sra/data_loaders/csra/test/test_sra.cpp	75 79
/src/sra/readers/bam/test/bam_compare.cpp	88
/src/sra/readers/bam/test/bam_test.cpp	101 108
/src/sra/readers/bam/test/bam_test_common.cpp	70 89 95 99 115
/src/sra/readers/bam/test/bamgraph_test.cpp	85 110
/src/sra/readers/bam/test/bamindex_test.cpp	94 107
/src/sra/readers/sra/test/csra_span_check.cpp	247
/src/sra/readers/sra/test/csra_test_mt.cpp	89 93 97
/src/sra/readers/sra/test/graph_test.cpp	94 108
/src/sra/readers/sra/test/snp_test.cpp	102 109 121 136 162
/src/sra/readers/sra/test/sra_test.cpp	89 97
/src/sra/readers/sra/test/vdb_test.cpp	108 122 129 143 150 180
/src/sra/readers/sra/test/wgs_resolver_test.cpp	268 274 278 282
/src/sra/readers/sra/test/wgs_scan.cpp	178
/src/sra/readers/sra/test/wgs_test.cpp	92 114 156 161 165
/src/util/image/test/test_image.cpp	70
/src/util/stream_source.cpp	48
/src/util/tables/test/test_scoremat.cpp	58
/src/util/test/test_cache_mt.cpp	191 194 197
/src/util/test/test_compress.cpp	139 144
/src/util/test/test_logrotate.cpp	86
/src/util/test/test_rangemap.cpp	299 306 317 320 323 327 330 333
/src/util/test/test_row_reader_performance.cpp	60 64 67
/src/util/test/test_staticmap.cpp	608 619 622 626
/src/util/test/test_tar.cpp	215
/src/util/test/test_thread_pool_old.cpp	67 70 73 75 78 81

1248 references in 287 files.