GIL (BcsE-like) c-di-GMP-binding domains in bacteria
Actinobacteria
. Corynebacterium jeikeium K411 ......................... 0* hits
Beta-proteobacteria
. Burkholderia ambifaria AMMD ........................... 1 hit
. Burkholderia cenocepacia AU 1054 ...................... 1 hit
. Burkholderia cepacia GG4 .............................. 1 hit
. Burkholderia mallei ATCC 23344 ........................ 1 hit
. Burkholderia multivorans ATCC 17616 ................... 1 hit
. Burkholderia pseudomallei K96243 ...................... 1 hit
. Burkholderia sp. CCGE1002 ............................. 1 hit
. Burkholderia sp. KJ006 ................................ 1 hit
. Burkholderia thailandensis E264 ....................... 1 hit
. Burkholderia vietnamiensis G4 ........................ 1 hit
. Chromobacterium violaceum ATCC 12472................... 1 hit
. Cupriavidus metallidurans CH34 ........................ 1 hit
. Ralstonia eutropha JMP134 ............................. 1 hit
Gamma-proteobacteria
. Aliivibrio salmonicida LFI1238 ........................ 1 hit
. Citrobacter koseri ATCC BAA-895 ....................... 1 hit
. Citrobacter rodentium ICC168 .......................... 1 hit
. Cronobacter sakazakii ATCC BAA-894 .................... 1 hit
. Cronobacter turicensis z3032 .......................... 1 hit
. Edwardsiella tarda EIB202 ............................. 1 hit
. Enterobacter aerogenes KCTC 2190 ...................... 1 hit
. Enterobacter asburiae LF7a ............................ 1 hit
. Enterobacter cloacae subsp. cloacae ATCC 13047 ........ 1 hit
. Enterobacter sp. 638 .................................. 1 hit
. Erwinia amylovora ATCC 49946 .......................... 1 hit
. Erwinia billingiae Eb661 .............................. 1 hit
. Erwinia pyrifoliae Ep1/96 ............................. 1 hit
. Erwinia sp. Ejp617 .................................... 1 hit
. Escherichia (Shimwellia) blattae DSM 4481 ............. 1 hit
. Escherichia coli K12 .................................. 1 hit
. Escherichia coli O157:H7 str. Sakai ................... 1 hit
. Escherichia fergusonii ATCC 35469 ..................... 1 hit
. Frateuria aurantia DSM 6220 ........................... 1 hit
. Klebsiella oxytoca KCTC 1686 .......................... 1 hit
. Klebsiella pneumoniae subsp. pneumoniae MGH 78578 ..... 1 hit
. Klebsiella variicola At-22 ............................ 1 hit
. Oceanimonas sp. GK1 ................................... 1 hit
. Pantoea sp. At-9b ..................................... 1 hit
. Pantoea vagans C9-1 ................................... 1 hit
. Pectobacterium atrosepticum SCRI1043 .................. 1 hit
. Pectobacterium carotovorum subsp. carotovorum PC1 ..... 1 hit
. Pectobacterium wasabiae WPP163 ........................ 1 hit
. Photobacterium profundum SS9 .......................... 1 hit
. Pseudoalteromonas haloplanktis TAC125 ................. 1 hit
. Pseudomonas putida KT2440 ............................. 0* hits
. Pseudomonas stutzeri A1501 ............................ 1 hit
. Rahnella sp. Y9602 .................................... 1 hit
. Salmonella bongori NCTC 12419 ......................... 1 hit
. Salmonella enterica serovar Paratyphi ATCC 9150 ....... 1 hit
. Salmonella enterica serovar Typhi str. CT18 ........... 1 hit
. Salmonella typhimurium LT2 ............................ 1 hit
. Serratia plymuthica AS9 ............................... 1 hit
. Serratia proteamaculans 568 ........................... 1 hit
. Serratia sp. AS12 ..................................... 1 hit
. Serratia sp. AS13 ..................................... 1 hit
. Shewanella violacea DSS12 ............................. 1 hit
. Shigella boydii Sb227 ................................. 1 hit
. Shigella flexneri 2a str. 301 ......................... 1 hit
. Shigella sonnei Ss046 ................................. 1 hit
. Vibrio fischeri ES114 ................................. 1 hit
. Yersinia enterocolitica subsp. enterocolitica 8081 .... 1 hit
Actinobacteria
Corynebacterium jeikeium K411
*jk1312 CAI37484 hypothetical protein jk13... BLink CDD UniProt Pfam InterPro
Beta-proteobacteria
Burkholderia ambifaria AMMD
Bamb_1261 ABI86819 diguanylate cyclase [Burk... BLink CDD UniProt Pfam InterPro
Burkholderia cenocepacia AU 1054
Bcen_0900 ABF75809 conserved hypothetical pr... BLink CDD UniProt Pfam InterPro
Burkholderia cepacia GG4
GEM_2047 AFQ48464 hypothetical protein GEM_... BLink CDD UniProt Pfam InterPro
Burkholderia mallei ATCC 23344
BMAA1587 AAU45783 hypothetical protein BMAA... BLink CDD UniProt Pfam InterPro
Burkholderia multivorans ATCC 17616
Bmul_1923 ABX15610 diguanylate cyclase/phosp... BLink CDD UniProt Pfam InterPro
Burkholderia pseudomallei K96243
BPSS1579 CAH39053 putative membrane protein... BLink CDD UniProt Pfam InterPro
Burkholderia sp. CCGE1002
BC1002_1064 ADG15152 cellulose biosynthesis ... BLink CDD UniProt Pfam InterPro
Burkholderia sp. KJ006
MYA_1221 AFJ85585 hypothetical protein MYA_... BLink CDD UniProt Pfam InterPro
Burkholderia thailandensis E264
BTH_II0794 ABC34820 conserved hypothetical p... BLink CDD UniProt Pfam InterPro
Burkholderia vietnamiensis G4
Bcep1808_1352 ABO54362 conserved hypothetical... BLink CDD UniProt Pfam InterPro
Chromobacterium violaceum ATCC 12472
CV2672 AAQ60342 conserved hypothetical pr... BLink CDD UniProt Pfam InterPro
Cupriavidus metallidurans CH34
Rmet_2253 ABF09132 probable protease involve... BLink CDD UniProt Pfam InterPro
Ralstonia eutropha JMP134
Reut_B3524 AAZ62882 conserved hypothetical pr... BLink CDD UniProt Pfam InterPro
Gamma-proteobacteria
Aliivibrio salmonicida LFI1238
VSAL_II0935 CAQ81689 hypothetical protein VSA... BLink CDD UniProt Pfam InterPro
Citrobacter koseri ATCC BAA-895
CKO_04981 ABV16025 hypothetical protein CKO_... BLink CDD UniProt Pfam InterPro
Citrobacter rodentium ICC168
ROD_42711 CBG90970 conserved hypothetical pr... BLink CDD UniProt Pfam InterPro
Cronobacter sakazakii ATCC BAA-894
ESA_04201 ABU79381 hypothetical protein ESA_... BLink CDD UniProt Pfam InterPro
Cronobacter (Siccibacter) turicensis z3032
Ctu_40380 CBA34362 phosphodiesterase [Crono... BLink CDD UniProt Pfam InterPro
Edwardsiella tarda EIB202
ETAE_3387 ACY86218 hypothetical protein ETAE... BLink CDD UniProt Pfam InterPro
Enterobacter aerogenes KCTC 2190
EAE_05940 AEG96115 hypothetical protein EAE_... BLink CDD UniProt Pfam InterPro
Enterobacter asburiae LF7a
Entas_4216 AEN66921 cellulose biosynthesis p... BLink CDD UniProt Pfam InterPro
Enterobacter cloacae subsp. cloacae ATCC 13047
ECL_04941 ADF64464 putative cytoplasmic prot... BLink CDD UniProt Pfam InterPro
Enterobacter sp. 638
Ent638_3933 ABP62588 putative cytoplasmic pro... BLink CDD UniProt Pfam InterPro
Erwinia amylovora ATCC 49946
EAM_3382 CBJ48056 conserved hypothetical pr... BLink CDD UniProt Pfam InterPro
Erwinia billingiae Eb661
EbC_43950 CAX61926 putative cellulose biosyn... BLink CDD UniProt Pfam InterPro
Erwinia pyrifoliae Ep1/96
EpC_35970 CAX57377 putative protease [Erwini... BLink CDD UniProt Pfam InterPro
Erwinia sp. Ejp617
EJP617_10740 ADP10755 putative protease [Erw... BLink CDD UniProt Pfam InterPro
Escherichia (Simwellia) blattae DSM 4481
EBL_c01450 AFJ45280 putative cellulose biosy... BLink CDD UniProt Pfam InterPro
Escherichia coli K12
BcsE (yhjS) AAC76561 cellulose production pr... BLink CDD UniProt Pfam InterPro
Escherichia coli O157:H7 str. Sakai
ECs4416 BAB37839 hypothetical protein ECs4... BLink CDD UniProt Pfam InterPro
Escherichia fergusonii ATCC 35469
EFER_3521 CAQ90998 putative protease involve... BLink CDD UniProt Pfam InterPro
Frateuria aurantia DSM 6220
Fraau_2358 AFC86725 diguanylate cyclase [Fra... BLink CDD UniProt Pfam InterPro
Klebsiella oxytoca KCTC 1686
KOX_05415 AEX02818 cellulose biosynthesis pr... BLink CDD UniProt Pfam InterPro
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
KPN_03886 ABR79273 hypothetical protein KPN_... BLink CDD UniProt Pfam InterPro
Klebsiella variicola At-22
Kvar_0215 ADC56146 cellulose biosynthesis pr... BLink CDD UniProt Pfam InterPro
Oceanimonas sp. GK1
GU3_14435 AEY02640 putative protease [Oceani... BLink CDD UniProt Pfam InterPro
Pantoea sp. At-9b
Pat9b_0125 ADU67452 cellulose biosynthesis p... BLink CDD UniProt Pfam InterPro
Pantoea vagans C9-1
Pvag_3361 ADO11498 uncharacterized protein y... BLink CDD UniProt Pfam InterPro
Pectobacterium atrosepticum SCRI1043
ECA4367 CAG77264 hypothetical protein ECA4... BLink CDD UniProt Pfam InterPro
Pectobacterium carotovorum subsp. carotovorum PC1
PC1_0079 ACT11141 cellulose biosynthesis pr... BLink CDD UniProt Pfam InterPro
Pectobacterium wasabiae WPP163
Pecwa_0076 ACX85944 cellulose biosynthesis p... BLink CDD UniProt Pfam InterPro
Photobacterium profundum SS9
PBPRA1717 CAG20124 hypothetical protein PBPR... BLink CDD UniProt Pfam InterPro
Pseudoalteromonas haloplanktis TAC125
PSHAa2159 CAI87215 putative protease BcsE [P... BLink CDD UniProt Pfam InterPro
Pseudomonas putida KT2440
*PP2629 AAN68237 hypothetical protein PP_... BLink CDD UniProt Pfam InterPro
*PP2630 AAN68238 hypothetical protein PP_... BLink CDD UniProt Pfam InterPro
Pseudomonas stutzeri A1501
PST_0284 ABP77990 putative protease [Pseudo... BLink CDD UniProt Pfam InterPro
Rahnella sp. Y9602
Rahaq_2149 ADW73760 cellulose biosynthesis p... BLink CDD UniProt Pfam InterPro
Salmonella bongori NCTC 12419
SBG_3216 CCC32269 conserved hypothetical pr... BLink CDD UniProt Pfam InterPro
Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150
SPA3478 AAV79286 hypothetical protein SPA3... BLink CDD UniProt Pfam InterPro
Salmonella enterica subsp. enterica serovar Typhi str. CT18
STY4178 CAD08003 hypothetical protein STY4... BLink CDD UniProt Pfam InterPro
Salmonella typhimurium LT2
STM3622 AAL22482 putative cytoplasmic prot... BLink CDD UniProt Pfam InterPro
Serratia plymuthica AS9
SerAS9_0107 AEF43269 cellulose biosynthesis ... BLink CDD UniProt Pfam InterPro
Serratia proteamaculans 568
Spro_0145 ABV39255 conserved hypothetical pr... BLink CDD UniProt Pfam InterPro
Serratia sp. AS12
SerAS12_0107 AEF48221 cellulose biosynthesis... BLink CDD UniProt Pfam InterPro
Serratia sp. AS13
SerAS13_0106 AEG25929 cellulose biosynthesis... BLink CDD UniProt Pfam InterPro
Shewanella violacea DSS12
SVI_0132 BAJ00103 conserved hypothetical pr... BLink CDD UniProt Pfam InterPro
Shigella boydii Sb227
SBO_3535 ABB68019 putative protease [Shigel... BLink CDD UniProt Pfam InterPro
Shigella flexneri 2a str. 301
SF3568 AAN45019 putative protease [Shigel... BLink CDD UniProt Pfam InterPro
Shigella sonnei Ss046
SSO_3854 AAZ90395 putative protease [Shigel... BLink CDD UniProt Pfam InterPro
Vibrio fischeri ES114
VF_A0886 AAW87956 hypothetical protein VFA0... BLink CDD UniProt Pfam InterPro
Yersinia enterocolitica subsp. enterocolitica 8081
YE4077 CAL14094 hypothetical protein YE40... BLink CDD UniProt Pfam InterPro
Please send corrections, questions and comments to Michael Galperin