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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS20052.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
20052.2 |
Public |
Mus musculus |
6 |
Trpv6 |
23 |
108 |
98 |
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Public Note for CCDS 20052.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript, conservation and publication evidence. The update uses a non-AUG (ACG) start codon, supported by data in PMID:23612980. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
Non-AUG initiation codon |
Sequence IDs included in CCDS 20052.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000031902.6 |
ENSMUSP00000031902.6 |
Accepted |
alive |
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EBI |
ENSMUST00000201471.4 |
ENSMUSP00000143854.2 |
Accepted |
alive |
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NCBI |
NM_022413.4 |
NP_071858.3 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_071858.3 |
767 |
Q91WD2 |
767 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 20052.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also. |
Translation Exceptions: replace the symbol T (codon ACG) with M at amino acid position 1
Nucleotide Sequence (2304 nt): ACGGGACCTCTACAGAGAGAGGACAGGCCGGCTCTTGGGGGTGCCAATGTGGCCCCAGGGTCGAGCCCAG TTGGGGTCTGGCATCAGCCTCAGCCCCCCAAGGAACCAGCCTTCCACCCCATGGGGTGGTCCCTGCCCAA GGAGAAGGGGTTAATACTCTGCCTATGGAACAAGTTCTGCAGATGGTTCCACAGACAAGAGTCCTGGGCT CAGAGCCGAGACGAGCAGAACCTGCTGCAGCAGAAGAGGATCTGGGAATCACCTCTTCTTCTAGCTGCCA AAGAAAACGATGTCCAGGCTCTGAGCAAGCTGCTCAAGTTTGAAGGATGTGAGGTGCACCAGAGAGGAGC CATGGGGGAAACTGCACTTCACATAGCAGCCCTCTATGATAACCTGGAGGCTGCAATGGTGCTAATGGAG GCTGCCCCAGAACTAGTCTTTGAGCCCATGACTTCGGAGCTATATGAAGGTCAGACTGCACTACACATTG CAGTAATAAACCAGAATGTAAACTTGGTCCGTGCTCTGCTTGCCCGAGGGGCCAGTGTCTCTGCCAGAGC TACAGGCTCTGTCTTCCACTACAGGCCTCACAACCTCATTTACTATGGAGAGCACCCTTTGTCCTTTGCT GCCTGTGTGGGTAGTGAGGAGATTGTTAGACTGCTCATTGAGCATGGAGCTGACATCCGTGCCCAGGACT CTCTGGGAAATACAGTACTACACATACTCATCCTGCAGCCCAACAAAACCTTTGCCTGCCAGATGTACAA CTTGCTACTGTCCTATGATGGGGGAGACCACCTGAAGTCCCTGGAACTTGTGCCAAATAACCAGGGACTC ACCCCCTTCAAGTTGGCTGGGGTGGAAGGCAACATTGTGATGTTCCAACACCTGATGCAGAAGCGGAAAC ACATCCAGTGGACATATGGGCCATTGACCTCCACACTGTATGACCTCACTGAGATTGACTCCTCAGGAGA TGATCAATCCCTACTGGAACTTATTGTTACTACCAAGAAACGGGAGGCTCGCCAGATCCTGGACCAGACA CCTGTAAAGGAACTGGTGAGCCTCAAGTGGAAGAGGTATGGGCGGCCCTACTTCTGCGTGCTGGGTGCCA TCTATGTGCTGTACATCATCTGCTTTACCATGTGCTGTGTCTACCGCCCGCTCAAGCCCAGGATCACTAA CCGCACCAACCCCCGGGACAACACTCTGATGCAACAGAAGCTCCTTCAGGAGGCCTATGTGACCCCTAAG GATGACCTCCGGTTGGTGGGGGAACTCGTGAGCATCGTTGGGGCTGTGATCATCCTGCTGGTGGAGATTC CAGACATCTTCAGGTTGGGGGTCACTCGATTCTTTGGACAGACCATTCTCGGGGGGCCATTCCATGTCAT CATTATCACTTATGCCTTCATGGTGCTGGTGACCATGGTGATGCGACTCACCAATGTAGATGGAGAAGTG GTGCCCATGTCCTTTGCTCTGGTGTTGGGCTGGTGCAATGTCATGTACTTTGCCAGAGGATTCCAGATGC TGGGTCCCTTCACCATCATGATTCAGAAGATGATTTTTGGTGACTTGATGCGATTCTGCTGGCTGATGGC TGTGGTAATTCTGGGATTTGCTTCAGCCTTCTATATCATTTTCCAGACAGAGGATCCCGATGAGCTGGGT CATTTCTATGACTACCCCATGGCACTGTTCAGCACCTTTGAACTCTTCCTCACCATCATCGATGGCCCTG CCAACTATGACGTGGATCTGCCCTTCATGTACAGCGTTACCTACGCTGCCTTTGCCATCATCGCCACACT GCTCATGCTTAACCTCCTCATTGCCATGATGGGTGACACTCACTGGAGAGTTGCCCATGAGCGAGATGAG CTCTGGAGAGCACAGGTTGTGGCCACCACTGTGATGTTAGAGCGGAAGCTACCTCGTTGCCTGTGGCCTC GCTCTGGGATATGTGGGCGAGAGTATGGTCTTGGCGACCGCTGGTTCTTGAGGGTGGAAGACAGGCAAGA TCTCAACAGACAACGCATCCGCCGCTATGCACAGGCCTTCCAGCAACAAGATGGCCTCTACTCTGAGGAC TTGGAAAAAGATTCAGGAGAAAAACTGGAGACAGCACGTCCCTTTGGTGCCTATCTGTCCTTTCCTACAC CCTCAGTATCTCGAAGTACCTCCCGAAGCAGCACCAATTGGGAAAGGCTTCGACAAGGGGCCCTGAGGAA GGACCTGCGGGGGATAATCAACCGGGGCCTAGAAGATGGGGAGGGCTGGGAGTACCAGATCTGA
Translation (767 aa): MGPLQREDRPALGGANVAPGSSPVGVWHQPQPPKEPAFHPMGWSLPKEKGLILCLWNKFCRWFHRQESWA QSRDEQNLLQQKRIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA ACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL TPFKLAGVEGNIVMFQHLMQKRKHIQWTYGPLTSTLYDLTEIDSSGDDQSLLELIVTTKKREARQILDQT PVKELVSLKWKRYGRPYFCVLGAIYVLYIICFTMCCVYRPLKPRITNRTNPRDNTLMQQKLLQEAYVTPK DDLRLVGELVSIVGAVIILLVEIPDIFRLGVTRFFGQTILGGPFHVIIITYAFMVLVTMVMRLTNVDGEV VPMSFALVLGWCNVMYFARGFQMLGPFTIMIQKMIFGDLMRFCWLMAVVILGFASAFYIIFQTEDPDELG HFYDYPMALFSTFELFLTIIDGPANYDVDLPFMYSVTYAAFAIIATLLMLNLLIAMMGDTHWRVAHERDE LWRAQVVATTVMLERKLPRCLWPRSGICGREYGLGDRWFLRVEDRQDLNRQRIRRYAQAFQQQDGLYSED LEKDSGEKLETARPFGAYLSFPTPSVSRSTSRSSTNWERLRQGALRKDLRGIINRGLEDGEGWEYQI
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