NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8534.1 Public Homo sapiens 12 KCNA6 24 110 108 CCDS HistoryNCBI Gene:3742Re-query CCDS DB by CCDS ID:8534.1Re-query CCDS DB by GeneID:3742See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8534.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280684.4 ENSP00000280684.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280684.4Link to Ensembl Protein Viewer:ENSP00000280684.3Re-query CCDS DB by Nucleotide ID:ENST00000280684Re-query CCDS DB by Protein ID:ENSP00000280684
Original member Current member NCBI NM_002235.5 NP_002226.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002235.5Link to Protein Sequence:NP_002226.1Re-query CCDS DB by Nucleotide ID:NM_002235Re-query CCDS DB by Protein ID:NP_002226Link to BLAST:NP_002226.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002226.1 529 P17658 529 100% 0 0

Chromosomal Locations for CCDS 8534.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4810042 4811631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGAGATCGGAGAAATCCCTTACGCTGGCGGCGCCGGGGGAGGTCCGTGGGCCGGAGGGAGAGCAACAGG
AT
GCGGGAGACTTCCCGGAGGCCGGCGGGGGCGGGGGCTGCTGTAGTAGCGAGCGGCTGGTGATCAATAT
C
TCCGGGCTGCGCTTTGAGACACAATTGCGCACCCTGTCGCTGTTTCCGGACACGCTGCTCGGAGACCCT
GGC
CGGCGAGTCCGCTTCTTCGACCCCCTGAGGAACGAGTACTTCTTCGACCGCAACCGGCCCAGCTTCG
AC
GCCATCCTCTACTACTACCAGTCTGGGGGCCGCCTGCGGAGGCCGGTCAACGTGCCCCTGGACATTTT
C
CTGGAGGAGATCCGCTTCTACCAGCTGGGGGACGAGGCCCTGGCGGCCTTCCGGGAGGACGAGGGCTGC
CTG
CCCGAAGGTGGCGAGGACGAGAAGCCGCTGCCCTCCCAGCCCTTCCAGCGCCAGGTGTGGCTGCTCT
TT
GAGTACCCAGAGAGCTCTGGGCCGGCCAGGGGCATCGCCATCGTCTCCGTGTTGGTCATTCTCATCTC
C
ATAGTCATCTTTTGCCTGGAGACCTTACCCCAGTTCCGTGTAGATGGTCGAGGTGGAAACAATGGTGGT
GTG
AGTCGAGTCTCCCCAGTTTCCAGGGGGAGTCAGGAGGAAGAGGAGGATGAAGACGATTCCTACACAT
TT
CATCATGGCATCACCCCTGGGGAAATGGGGACCGGGGGCTCCTCCTCACTCAGTACTCTTGGGGGCTC
C
TTCTTTACAGACCCCTTCTTTCTGGTGGAGACGCTGTGCATTGTCTGGTTCACTTTTGAGCTCCTGGTG
CGC
TTCTCCGCCTGCCCTAGCAAGCCGGCCTTCTTCCGGAACATCATGAACATCATTGACTTGGTGGCTA
TC
TTCCCCTACTTCATCACCCTGGGCACTGAGCTGGTGCAGCAGCAGGAGCAGCAACCAGCCAGTGGAGG
A
GGCGGCCAGAATGGGCAGCAGGCCATGTCCCTGGCCATCCTCCGAGTCATCCGCCTGGTCCGGGTGTTC
CGC
ATCTTCAAGCTCTCCCGCCACTCCAAGGGGCTGCAGATCCTGGGCAAGACCTTGCAGGCCTCCATGA
GG
GAGCTGGGGCTGCTCATCTTCTTCCTCTTCATCGGGGTCATCCTCTTCTCCAGTGCCGTCTACTTCGC
A
GAGGCTGACGATGACGATTCGCTTTTTCCCAGCATCCCGGATGCCTTCTGGTGGGCAGTGGTTACAATG
ACC
ACGGTAGGTTACGGGGACATGTACCCCATGACTGTGGGGGGAAAGATCGTGGGCTCGCTGTGTGCCA
TC
GCTGGGGTCCTCACCATTGCCCTGCCTGTGCCCGTCATCGTCTCCAACTTCAACTACTTCTACCACCG
G
GAGACGGAGCAGGAGGAGCAAGGCCAGTATACCCACGTCACTTGTGGGCAGCCTGCGCCGGACCTGAGG
GCA
ACTGACAACGGACTTGGCAAGCCTGACTTCCCCGAGGCTAACCGGGAACGGAGACCCAGCTACCTTC
CT
ACACCACATCGGGCCTATGCAGAGAAAAGAATGCTCACGGAGGTCTGA


Translation (529 aa):
MRSEKSLTLAAPGEVRGPEGEQQDAGDFPEAGGGGGCCSSERLVINISGLRFETQLRTLSLFPDTLLGDP
G
RRVRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFLEEIRFYQLGDEALAAFREDEGC
L
PEGGEDEKPLPSQPFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETLPQFRVDGRGGNNGG
V
SRVSPVSRGSQEEEEDEDDSYTFHHGITPGEMGTGGSSSLSTLGGSFFTDPFFLVETLCIVWFTFELLV
R
FSACPSKPAFFRNIMNIIDLVAIFPYFITLGTELVQQQEQQPASGGGGQNGQQAMSLAILRVIRLVRVF
R
IFKLSRHSKGLQILGKTLQASMRELGLLIFFLFIGVILFSSAVYFAEADDDDSLFPSIPDAFWWAVVTM
T
TVGYGDMYPMTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEQEEQGQYTHVTCGQPAPDLR
A
TDNGLGKPDFPEANRERRPSYLPTPHRAYAEKRMLTEV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser