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Report for CCDS19934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19934.1 Public Mus musculus 6 Kcnd2 23 108 98 CCDS HistoryNCBI Gene:16508Re-query CCDS DB by CCDS ID:19934.1Re-query CCDS DB by GeneID:16508See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19934.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081542.5 ENSMUSP00000080257.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081542.5Link to Ensembl Protein Viewer:ENSMUSP00000080257.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081542Re-query CCDS DB by Protein ID:ENSMUSP00000080257
Original member Current member NCBI NM_019697.4 NP_062671.1 Accepted alive Link to Nucleotide Sequence:NM_019697.4Link to Protein Sequence:NP_062671.1Re-query CCDS DB by Nucleotide ID:NM_019697Re-query CCDS DB by Protein ID:NP_062671Link to BLAST:NP_062671.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062671.1 630 Q9Z0V2 630 100% 0 0

Chromosomal Locations for CCDS 19934.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 21216299 21217413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21714135 21714297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21722386 21722481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21723187 21723279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21725977 21726224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21727165 21727342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGGCAGCCGGTGTTGCAGCATGGCTGCCCTTTGCCAGGGCAGCCGCCATTGGGTGGATGCCTGTTGCTT
CGGGGCCTATGCCTGCGCCCCCAAGACAGGAGAGAAAAAGGACTCAGGACGCTCTGATAGTGCTGAACGT
GAGTGGCACCCGTTTCCAGACATGGCAAGACACCCTGGAACGATACCCAGACACTCTGCTGGGTAGTTCT
GAGAGAGACTTTTTCTACCACCCAGAGACCCAACAATACTTCTTTGACCGTGACCCGGACATCTTCCGCC
ACATCCTCAACTTCTACCGCACGGGGAAGCTTCACTATCCCCGCCATGAGTGCATCTCGGCTTATGATGA
AGAACTGGCCTTCTTTGGCCTCATCCCAGAAATTATTGGCGACTGCTGTTATGAGGAGTACAAGGACCGC
AGGCGGGAGAATGCTGAGCGCCTCCAGGATGATGCAGACACTGACAATACAGGAGAGAGTGCGCTGCCCA
CCATGACTGCTAGGCAGAGGGTCTGGCGGGCCTTTGAGAATCCCCACACCAGCACCATGGCCCTGGTGTT
CTACTATGTGACTGGGTTCTTCATTGCCGTCTCAGTCATCGCGAATGTGGTGGAAACAGTTCCATGTGGG
TCTAGCCCAGGCCACATAAAAGAACTGCCTTGTGGGGAGAGGTATGCGGTGGCCTTCTTCTGCTTGGATA
CCGCCTGTGTCATGATCTTCACAGTTGAGTACTTGCTTCGCCTGGCCGCAGCACCTAGTCGTTACCGTTT
CGTGCGCAGTGTCATGAGTATCATCGACGTGGTGGCCATCCTACCCTATTACATTGGGCTGGTGATGACA
GACAATGAGGATGTCAGTGGAGCCTTTGTCACACTCCGAGTCTTTCGAGTCTTCAGGATCTTTAAGTTTT
CCCGCCACTCTCAAGGGCTGCGTATACTGGGGTACACCCTGAAGAGCTGTGCATCAGAACTGGGCTTCTT
GCTCTTTTCTCTCACAATGGCTATCATCATTTTCGCTACCGTTATGTTCTACGCAGAGAAGGGCTCTTCA
GCAAGCAAGTTCACCAGCATCCCGGCAGCCTTCTGGTACACCATCGTCACCATGACAACACTGGGGTATG
GCGACATGGTACCAAAAACCATAGCAGGGAAGATTTTTGGGTCCATCTGCTCACTGAGCGGAGTCTTGGT
CATTGCGCTACCCGTGCCTGTGATCGTGTCGAACTTCAGTCGGATCTACCACCAAAACCAACGAGCAGAC
AAACGAAGGGCACAGAAGAAAGCCAGGCTGGCCAGGATCCGAGCAGCCAAAAGCGGGAGTGCAAATGCCT
ACATGCAGAGCAAGCGGAATGGGCTACTGAGCAACCAGCTGCAGTCCTCGGAGGATGAACCGGCCTTCAT
AAGCAAATCTGGATCCAGCTTTGAGACACAGCACCACCACCTGCTTCACTGCCTGGAGAAAACCACGAAC
CATGAGTTTGTCGATGAACAAGTCTTTGAAGAAAGCTGCATGGAAGTTGCCACCGTCAATCGCCCATCAA
GTCACAGTCCCTCTCTCTCCTCACAACAAGGAGTCACCAGCACTTGCTGCTCACGGAGACACAAAAAGAC
TTTCCGCATTCCTAATGCCAATGTGTCGGGAAGCCATAGAGGCAGTGTGCAAGAACTCAGTACAATTCAG
ATCAGATGTGTGGAGAGAACTCCACTATCCAACAGCCGATCCAGCTTAAATGCCAAAATGGAAGAGTGTG
TTAAACTAAACTGTGAACAACCTTACGTGACCACAGCAATAATAAGCATCCCAACACCTCCAGTAACCAC
CCCAGAAGGCGACGACAGGCCCGAGTCTCCTGAGTATTCGGGAGGAAATATCGTCAGGGTGTCTGCCTTG
TAA

Translation (630 aa):
MAAGVAAWLPFARAAAIGWMPVASGPMPAPPRQERKRTQDALIVLNVSGTRFQTWQDTLERYPDTLLGSS
ERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDR
RRENAERLQDDADTDNTGESALPTMTARQRVWRAFENPHTSTMALVFYYVTGFFIAVSVIANVVETVPCG
SSPGHIKELPCGERYAVAFFCLDTACVMIFTVEYLLRLAAAPSRYRFVRSVMSIIDVVAILPYYIGLVMT
DNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSS
ASKFTSIPAAFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRAD
KRRAQKKARLARIRAAKSGSANAYMQSKRNGLLSNQLQSSEDEPAFISKSGSSFETQHHHLLHCLEKTTN
HEFVDEQVFEESCMEVATVNRPSSHSPSLSSQQGVTSTCCSRRHKKTFRIPNANVSGSHRGSVQELSTIQ
IRCVERTPLSNSRSSLNAKMEECVKLNCEQPYVTTAIISIPTPPVTTPEGDDRPESPEYSGGNIVRVSAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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