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Report for CCDS73810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73810.1 Public Homo sapiens 16 E4F1 24 110 108 CCDS HistoryNCBI Gene:1877Re-query CCDS DB by CCDS ID:73810.1Re-query CCDS DB by GeneID:1877See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73810.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000564139.5 ENSP00000457672.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564139.5Link to Ensembl Protein Viewer:ENSP00000457672.1Re-query CCDS DB by Nucleotide ID:ENST00000564139Re-query CCDS DB by Protein ID:ENSP00000457672
Original member Current member NCBI NM_001288776.2 NP_001275705.2 Accepted alive Link to Nucleotide Sequence:NM_001288776.2Link to Protein Sequence:NP_001275705.2Re-query CCDS DB by Nucleotide ID:NM_001288776Re-query CCDS DB by Protein ID:NP_001275705Link to BLAST:NP_001275705.2

Chromosomal Locations for CCDS 73810.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2223614 2223770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2228372 2228523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2229570 2229675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2232171 2232364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2232456 2232576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2232756 2232908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2233011 2233183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2233438 2233647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2233882 2233990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2234171 2234388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2234583 2234781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2234859 2234949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2235081 2235143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2235216 2235234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGGAGGGCGCGATGGCAGTGCGGGTGACGGCCGCTCATACGGCAGAAGCCCAGGCCGAAGCCGGGCGGG
AAGCGGGCGAGGGTGCAGTTGCGGCGGTGGCGGCGGCCTTGGCCCCCAGCGGCTTCCTCGGCCTCCCGGC
GCCCTTCAGCGAGGAAGATGAGGACGATGTGCACAGATGCGGCCGCTGCCAGGCAGAGTTCACCGCCTTG
GAGGATTTTGTTCAGCACAAGATTCAGAAGGCCTGCCAGCGGGCCCCTCCGGAGGCCCTGCCTGCCACCC
CTGCCACCACAGCGTTGCTGGGCCAGGAGGTGGTGCCGGCAGCACCAGGCCCAGAGGAGCCCATCACTGT
GGCCCACATCGTGGTGGAGGCGGCCTCTCTGGCAGCAGACATCAGCCACGCATCTGACCTTGTTGGTGGT
GGGCACATCAAAGAGGTCATCGTGGCTGCTGAGGCGGAGCTGGGAGACGGTGAGATGGCCGAGGCCCCGG
GCAGCCCCCGCCAGCAGGGGCTGGGGCTCGCAGGGGAGGGTGAGCAGGCCCAGGTGAAGCTACTGGTGAA
CAAGGATGGCCGCTATGTGTGTGCGCTGTGCCACAAGACCTTCAAGACGGGCAGCATCCTCAAGGCCCAC
ATGGTCACTCACAGCAGCCGCAAGGACCACGAGTGCAAGCTCTGTGGGGCCTCCTTCCGCACCAAGGGCT
CACTCATCCGGCACCACCGGCGGCACACGGATGAGCGCCCCTACAAGTGCTCCAAGTGTGGAAAGAGCTT
CCGGGAGTCGGGTGCACTGACCCGGCACCTCAAGTCTCTCACCCCCTGCACAGAGAAAATCCGCTTCAGT
GTGAGCAAGGACGTGGTTGTCAGCAAAGAGGACGCACGTGCAGGTTCTGGAGCTGGAGCTGCCGGCTTGG
GGACAGCCACATCATCGGTGACAGGCGAGCCTATAGAGACTTCACCCGTGATTCACCTGGTGACAGATGC
CAAGGGCACCGTCATCCACGAAGTCCACGTCCAGATGCAGGAGCTGTCCCTGGGCATGAAAGCCCTGGCC
CCAGAGCCCCCCGTCTCCCAGGAGCTCCCCTGCTCCAGCGAGGGCAGCCGTGAGAACCTGCTGCACCAGG
CCATGCAGAACTCCGGCATCGTCCTTGAGCGCGCTGCTGGGGAGGAGGGTGCCCTGGAGCCAGCTCCTGC
TGCCGGGTCCAGTCCCCAGCCCCTGGCAGTGGCAGCCCCGCAGCTGCCGGTACTGGAAGTGCAGCCGCTG
GAGACACAGGTGGCCAGCGAGGCCTCAGCGGTGCCCAGGACCCACCCATGTCCTCAGTGCAGTGAGACCT
TCCCGACAGCAGCCACCCTGGAGGCCCACAAGAGGGGCCACACCGGGCCGAGGCCGTTCGCCTGCGCGCA
GTGTGGCAAGGCCTTCCCCAAGGCCTACCTGCTCAAGAAGCACCAGGAGGTGCACGTGCGTGAGCGCCGC
TTCCGCTGTGGCGACTGCGGGAAGCTCTACAAGACCATTGCCCATGTGCGTGGCCACCGGCGCGTCCACT
CAGACGAGCGGCCCTACCCTTGTCCCAAGTGTGGCAAGCGCTACAAGACTAAGAACGCACAGCAGGTGCA
CTTCAGGACACACCTGGAGGAGAAGCCGCACGTGTGCCAGTTCTGCAGCCGTGGCTTCCGAGAGAAGGGC
TCACTGGTGCGGCACGTGCGACACCACACAGGCGAGAAGCCGTTCAAGTGCTACAAGTGCGGCCGTGGCT
TCGCCGAGCACGGCACGCTGAACCGGCACCTGCGCACCAAAGGGGGCTGCCTGCTGGAGGTGGAGGAGTT
GCTGGTGTCTGAGGACAGCCCCGCGGCAGCCACCACCGTCCTCACGGAAGACCCGCACACAGTGCCACTG
CGGACGATGCGGAGACCAGTGAGGCCACGGAGATCATCGAGGGCACCCAGACAGAGGTGGACAGCCACAT
CATGA

Translation (654 aa):
MEGAMAVRVTAAHTAEAQAEAGREAGEGAVAAVAAALAPSGFLGLPAPFSEEDEDDVHRCGRCQAEFTAL
EDFVQHKIQKACQRAPPEALPATPATTALLGQEVVPAAPGPEEPITVAHIVVEAASLAADISHASDLVGG
GHIKEVIVAAEAELGDGEMAEAPGSPRQQGLGLAGEGEQAQVKLLVNKDGRYVCALCHKTFKTGSILKAH
MVTHSSRKDHECKLCGASFRTKGSLIRHHRRHTDERPYKCSKCGKSFRESGALTRHLKSLTPCTEKIRFS
VSKDVVVSKEDARAGSGAGAAGLGTATSSVTGEPIETSPVIHLVTDAKGTVIHEVHVQMQELSLGMKALA
PEPPVSQELPCSSEGSRENLLHQAMQNSGIVLERAAGEEGALEPAPAAGSSPQPLAVAAPQLPVLEVQPL
ETQVASEASAVPRTHPCPQCSETFPTAATLEAHKRGHTGPRPFACAQCGKAFPKAYLLKKHQEVHVRERR
FRCGDCGKLYKTIAHVRGHRRVHSDERPYPCPKCGKRYKTKNAQQVHFRTHLEEKPHVCQFCSRGFREKG
SLVRHVRHHTGEKPFKCYKCGRGFAEHGTLNRHLRTKGGCLLEVEELLVSEDSPAAATTVLTEDPHTVPL
RTMRRPVRPRRSSRAPRQRWTATS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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