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Report for CCDS54013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54013.1 Public Homo sapiens 16 SETD6 24 110 108 CCDS HistoryNCBI Gene:79918Re-query CCDS DB by CCDS ID:54013.1Re-query CCDS DB by GeneID:79918See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54013.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000219315.9 ENSP00000219315.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000219315.9Link to Ensembl Protein Viewer:ENSP00000219315.5Re-query CCDS DB by Nucleotide ID:ENST00000219315Re-query CCDS DB by Protein ID:ENSP00000219315
Original member Current member NCBI NM_001160305.4 NP_001153777.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001160305.4Link to Protein Sequence:NP_001153777.1Re-query CCDS DB by Nucleotide ID:NM_001160305Re-query CCDS DB by Protein ID:NP_001153777Link to BLAST:NP_001153777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153777.1 473 Q8TBK2-1 473 100% 0 0

Chromosomal Locations for CCDS 54013.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58515538 58515564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58515791 58516097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58516202 58516343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58516478 58516672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58516808 58516928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58518051 58518231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58518401 58518543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58518724 58519029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCGACCCAGGCGAAGCGTCCACGGGTGGCGGGGCCCGTGGACGGCGGCGACCTGGATCCTGTGGCCT
GCTTCCTGAGCTGGTGCCGGCGGGTGGGGCTGGAGCTGAGTCCCAAGGTGAGCGAGCGAGCCGGCGGGCG
GAGGACCCGCGGCGGGGCGCGGGCTGCCCTGACCAGCCCTCCTGCTCAGGTGGCGGTCAGCCGGCAGGGC
ACGGTGGCCGGCTACGGCATGGTGGCCCGGGAGAGCGTGCAGGCCGGAGAGCTGTTGTTCGTGGTGCCGC
GGGCCGCGCTCCTGTCGCAGCACACCTGCTCCATCGGCGGCCTGCTGGAGCGAGAGCGAGTTGCGCTGCA
GAGCCAGTCGGGCTGGGTGCCACTGCTGCTGGCGCTGCTCCACGAGCTGCAGGCCCCGGCCTCACGCTGG
AGGCCCTACTTTGCGCTCTGGCCCGAGCTGGGCCGCTTGGAGCACCCGATGTTCTGGCCAGAGGAGGAGC
GCCGGTGCCTGCTCCAGGGCACAGGCGTACCTGAGGCCGTGGAGAAGGATTTGGCCAACATCCGCAGCGA
GTACCAGTCCATCGTGCTGCCCTTCATGGAAGCCCACCCCGATCTCTTCAGCCTCAGGGTTCGCTCCCTA
GAACTCTACCACCAGCTGGTGGCCCTTGTGATGGCCTATAGCTTTCAGGAACCACTGGAGGAAGAAGAGG
ATGAAAAGGAGCCCAACTCCCCCGTGATGGTGCCTGCTGCAGACATACTAAACCACTTAGCCAATCACAA
CGCCAATCTAGAATACTCTGCGAATTGTCTTCGGATGGTAGCCACTCAGCCCATTCCTAAAGGCCATGAG
ATTTTCAACACTTATGGGCAAATGGCTAACTGGCAACTGATTCATATGTACGGTTTTGTTGAACCATATC
CTGACAACACAGATGACACAGCTGACATTCAGATGGTGACAGTTCGTGAGGCAGCATTACAGGGAACAAA
AACTGAAGCTGAAAGGCACCTAGTGTACGAGCGCTGGGATTTCCTATGCAAACTGGAGATGGTAGGGGAA
GAGGGAGCCTTTGTGATAGGGAGGGAGGAGGTGCTGACTGAAGAGGAGCTGACCACCACACTAAAGGTAC
TGTGCATGCCTGCTGAGGAGTTCAGAGAGCTTAAAGACCAGGATGGAGGGGGAGATGATAAAAGGGAAGA
GGGCAGCCTGACGATCACAAATATTCCCAAGCTCAAAGCATCGTGGAGACAGCTGCTTCAAAACAGTGTT
CTACTGACTTTGCAGACCTATGCCACAGACTTAAAAACTGACCAAGGTTTACTCAGTAATAAGGAAGTCT
ATGCGAAACTCAGCTGGAGGGAACAGCAAGCCTTACAGGTTCGCTATGGTCAGAAGATGATCTTACATCA
GTTGTTGGAGCTGACAAGTTAG

Translation (473 aa):
MATQAKRPRVAGPVDGGDLDPVACFLSWCRRVGLELSPKVSERAGGRRTRGGARAALTSPPAQVAVSRQG
TVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGGLLERERVALQSQSGWVPLLLALLHELQAPASRW
RPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFSLRVRSL
ELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHE
IFNTYGQMANWQLIHMYGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGE
EGAFVIGREEVLTEEELTTTLKVLCMPAEEFRELKDQDGGGDDKREEGSLTITNIPKLKASWRQLLQNSV
LLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQLLELTS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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