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Report for CCDS9941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9941.1 Public Homo sapiens 14 TCL1A 24 110 108 CCDS HistoryNCBI Gene:8115Re-query CCDS DB by CCDS ID:9941.1Re-query CCDS DB by GeneID:8115See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9941.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402399.6 ENSP00000385036.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402399.6Link to Ensembl Protein Viewer:ENSP00000385036.1Re-query CCDS DB by Nucleotide ID:ENST00000402399Re-query CCDS DB by Protein ID:ENSP00000385036
Original member Current member EBI ENST00000555202.1 ENSP00000450496.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555202.1Link to Ensembl Protein Viewer:ENSP00000450496.1Re-query CCDS DB by Nucleotide ID:ENST00000555202Re-query CCDS DB by Protein ID:ENSP00000450496
Original member Current member EBI ENST00000556450.5 ENSP00000450701.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556450.5Link to Ensembl Protein Viewer:ENSP00000450701.1Re-query CCDS DB by Nucleotide ID:ENST00000556450Re-query CCDS DB by Protein ID:ENSP00000450701
Original member Current member EBI ENST00000554012.5 ENSP00000451506.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554012.5Link to Ensembl Protein Viewer:ENSP00000451506.1Re-query CCDS DB by Nucleotide ID:ENST00000554012Re-query CCDS DB by Protein ID:ENSP00000451506
Original member Current member NCBI NM_001098725.2 NP_001092195.1 Accepted alive Link to Nucleotide Sequence:NM_001098725.2Link to Protein Sequence:NP_001092195.1Re-query CCDS DB by Nucleotide ID:NM_001098725Re-query CCDS DB by Protein ID:NP_001092195Link to BLAST:NP_001092195.1
Original member Current member NCBI NM_021966.3 NP_068801.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021966.3Link to Protein Sequence:NP_068801.1Re-query CCDS DB by Nucleotide ID:NM_021966Re-query CCDS DB by Protein ID:NP_068801Link to BLAST:NP_068801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092195.1 114 P56279 114 100% 0 0
NP_068801.1 114 P56279 114 100% 0 0

Chromosomal Locations for CCDS 9941.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 95711755 95711802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95712220 95712396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95713947 95714066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGGCCGAGTGCCCGACACTCGGGGAGGCAGTCACCGACCACCCGGACCGCCTGTGGGCCTGGGAGAAGT
TCGTGTATTTGGACGAGAAGCAGCACGCCTGGCTGCCCTTAACCATCGAGATAAAGGATAGGTTACAGTT
ACGGGTGCTCTTGCGTCGGGAAGACGTCGTCCTGGGGAGGCCTATGACCCCCACCCAGATAGGCCCAAGC
CTGCTGCCTATCATGTGGCAGCTCTACCCTGATGGACGATACCGATCCTCAGACTCCAGTTTCTGGCGCT
TAGTGTACCACATCAAGATTGACGGCGTGGAGGACATGCTTCTCGAGCTGCTGCCAGATGACTGA

Translation (114 aa):
MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGRPMTPTQIGPS
LLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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