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Report for CCDS9887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9887.1 Public Homo sapiens 14 EFCAB11 24 110 108 CCDS HistoryNCBI Gene:90141Re-query CCDS DB by CCDS ID:9887.1Re-query CCDS DB by GeneID:90141See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9887.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316738.12 ENSP00000326267.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316738.12Link to Ensembl Protein Viewer:ENSP00000326267.7Re-query CCDS DB by Nucleotide ID:ENST00000316738Re-query CCDS DB by Protein ID:ENSP00000326267
Original member Current member NCBI NM_145231.4 NP_660274.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145231.4Link to Protein Sequence:NP_660274.1Re-query CCDS DB by Nucleotide ID:NM_145231Re-query CCDS DB by Protein ID:NP_660274Link to BLAST:NP_660274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660274.1 163 Q9BUY7-1 163 100% 0 0

Chromosomal Locations for CCDS 9887.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 89797243 89797324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89931541 89931631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89932526 89932627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89950097 89950142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89953906 89954001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 89954586 89954660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGTTCTTCTCCGAGGCCAGAGCCAGGTCGCGGACGTGGGAAGCCAGTCCCTCGGAACACAGGAAGTGGG
TGGAAGTATTTAAAGCATGTGATGAAGATCACAAAGGATATCTCAGCAGAGAGGACTTTAAAACTGCTGT
TGTAATGCTGTTTGGGTACAAGCCCTCCAAGATAGAAGTGGATTCTGTGATGTCTTCAATAAATCCAAAT
ACTTCTGGTATATTACTCGAGGGGTTTTTAAATATTGTCAGGAAAAAGAAGGAAGCTCAACGATATCGGA
ACGAAGTAAGACACATCTTCACAGCCTTTGACACCTACTATCGTGGATTTTTAACTTTGGAAGATTTCAA
AAAAGCATTTAGGCAGGTGGCTCCCAAATTACCGGAAAGGACTGTTCTTGAGGTATTCAGGGAAGTAGAT
CGAGATTCAGATGGTCACGTCAGCTTTAGAGACTTTGAATATGCCCTGAACTATGGACAGAAGGAAGCCT
AA

Translation (163 aa):
MFFSEARARSRTWEASPSEHRKWVEVFKACDEDHKGYLSREDFKTAVVMLFGYKPSKIEVDSVMSSINPN
TSGILLEGFLNIVRKKKEAQRYRNEVRHIFTAFDTYYRGFLTLEDFKKAFRQVAPKLPERTVLEVFREVD
RDSDGHVSFRDFEYALNYGQKEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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