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Report for CCDS9670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9670.1 Public Homo sapiens 14 TRAPPC6B 24 110 108 CCDS HistoryNCBI Gene:122553Re-query CCDS DB by CCDS ID:9670.1Re-query CCDS DB by GeneID:122553See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 9670.1
This CCDS ID represents the shorter isoform encoded by the TRAPPC6B gene. Although this protein lacks a segment of the predicted TRAPP_Bet3 domain compared to the longer isoform (represented by CCDS41947.1), there are several transcripts supporting this shorter variant, and there is no experimental evidence indicating that this variant does not encode a protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9670.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347691.9 ENSP00000335171.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347691.9Link to Ensembl Protein Viewer:ENSP00000335171.6Re-query CCDS DB by Nucleotide ID:ENST00000347691Re-query CCDS DB by Protein ID:ENSP00000335171
Original member Current member NCBI NM_177452.4 NP_803235.1 Accepted alive Link to Nucleotide Sequence:NM_177452.4Link to Protein Sequence:NP_803235.1Re-query CCDS DB by Nucleotide ID:NM_177452Re-query CCDS DB by Protein ID:NP_803235Link to BLAST:NP_803235.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803235.1 130 Q86SZ2-2 130 100% 0 0

Chromosomal Locations for CCDS 9670.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 39150350 39150381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 39151746 39151839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 39158285 39158402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 39159483 39159550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 39170015 39170095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGGCGGATGAGGCGTTGTTTTTGCTTCTCCATAACGAGATGGTGTCTGGAGTGTACAAGTCCGCGGAGC
AGGGGGAGGTGGAAAACGGACGATGTATTACTAAGCTGGAAAACATGGGGTTTCGAGTGGGACAAGGATT
GATAGAAAGGTTTACAAAAGATACTGCAAGGTTCAAGGATGAGTTAGATATCATGAAGTTCATTTGTAAA
GATTTTTGGACTACGGTATTCAAGAAACAAATCGACAATCTAAGGACAAATCATCAGTATTTAGCATTTA
CGTGTGGCTTAATCAGAGGTGGCTTATCAAACTTGGGAATAAAAAGTATTGTAACAGCTGAAGTGTCTTC
AATGCCTGCTTGCAAATTTCAGGTGATGATACAGAAGCTGTAG

Translation (130 aa):
MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFICK
DFWTTVFKKQIDNLRTNHQYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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