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Report for CCDS9652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9652.1 Public Homo sapiens 14 SRP54 24 110 108 CCDS HistoryNCBI Gene:6729Re-query CCDS DB by CCDS ID:9652.1Re-query CCDS DB by GeneID:6729See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9652.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216774.11 ENSP00000216774.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216774.11Link to Ensembl Protein Viewer:ENSP00000216774.6Re-query CCDS DB by Nucleotide ID:ENST00000216774Re-query CCDS DB by Protein ID:ENSP00000216774
Original member Current member EBI ENST00000556994.5 ENSP00000451818.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556994.5Link to Ensembl Protein Viewer:ENSP00000451818.1Re-query CCDS DB by Nucleotide ID:ENST00000556994Re-query CCDS DB by Protein ID:ENSP00000451818
Original member Current member EBI ENST00000678963.1 ENSP00000504518.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678963.1Link to Ensembl Protein Viewer:ENSP00000504518.1Re-query CCDS DB by Nucleotide ID:ENST00000678963Re-query CCDS DB by Protein ID:ENSP00000504518
Original member Current member EBI ENST00000677647.1 ENSP00000504673.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677647.1Link to Ensembl Protein Viewer:ENSP00000504673.1Re-query CCDS DB by Nucleotide ID:ENST00000677647Re-query CCDS DB by Protein ID:ENSP00000504673
Original member Current member NCBI NM_003136.4 NP_003127.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003136.4Link to Protein Sequence:NP_003127.1Re-query CCDS DB by Nucleotide ID:NM_003136Re-query CCDS DB by Protein ID:NP_003127Link to BLAST:NP_003127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003127.1 504 P61011-1 504 100% 0 0

Chromosomal Locations for CCDS 9652.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34996710 34996787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34999558 34999649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35000936 35001020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35007283 35007387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35008627 35008693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35008774 35008831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35011509 35011659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35013346 35013494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35013802 35013902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35014744 35014830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35018692 35018765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35018966 35019074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35022910 35023080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35028088 35028183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35029061 35029152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGTTCTAGCAGACCTTGGAAGAAAAATAACATCAGCATTACGCTCGTTGAGCAATGCCACCATTATCA
ATGAAGAGGTATTGAATGCTATGCTAAAAGAAGTCTGTACCGCTTTGTTGGAAGCAGATGTTAATATTAA
ACTAGTGAAGCAACTAAGAGAAAATGTTAAGTCTGCTATTGATCTTGAAGAGATGGCATCTGGTCTTAAC
AAAAGAAAAATGATTCAGCATGCTGTATTTAAAGAACTTGTGAAGCTTGTAGACCCTGGAGTTAAGGCAT
GGACACCCACTAAAGGAAAACAAAATGTGATTATGTTTGTTGGATTGCAAGGGAGTGGTAAAACAACAAC
ATGTTCAAAGCTAGCATATTATTACCAGAGGAAAGGTTGGAAGACCTGTTTAATATGTGCAGACACATTC
AGAGCAGGGGCTTTTGACCAACTAAAACAGAATGCTACCAAAGCAAGAATTCCATTTTATGGAAGCTATA
CAGAAATGGATCCTGTCATCATTGCTTCTGAAGGAGTAGAGAAATTTAAAAATGAAAATTTTGAAATTAT
TATTGTTGATACAAGTGGCCGCCACAAACAAGAAGACTCTTTGTTTGAAGAAATGCTTCAAGTTGCTAAT
GCTATACAACCTGATAACATTGTTTATGTGATGGATGCCTCCATTGGGCAGGCTTGTGAAGCCCAGGCTA
AGGCTTTTAAAGATAAAGTAGATGTAGCCTCAGTAATAGTGACAAAACTTGATGGCCATGCAAAAGGAGG
TGGTGCACTCAGTGCAGTCGCTGCCACAAAAAGTCCGATTATTTTCATTGGTACAGGGGAACATATAGAT
GACTTTGAACCTTTCAAAACACAGCCTTTTATTAGCAAACTTCTTGGTATGGGCGACATTGAAGGACTGA
TAGATAAAGTCAACGAGTTGAAGTTGGATGACAATGAAGCACTTATAGAGAAGTTGAAACATGGTCAGTT
TACGTTGCGAGACATGTATGAGCAATTTCAAAATATCATGAAAATGGGCCCCTTCAGTCAGATCTTGGGG
ATGATCCCTGGTTTTGGGACAGATTTTATGAGCAAAGGAAATGAACAGGAGTCAATGGCAAGGCTAAAGA
AATTAATGACAATAATGGATAGTATGAATGATCAAGAACTAGACAGTACGGATGGTGCCAAAGTTTTTAG
TAAACAACCAGGAAGAATCCAAAGAGTAGCAAGAGGATCGGGTGTATCAACAAGAGATGTTCAAGAACTT
TTGACACAATATACCAAGTTTGCACAGATGGTAAAAAAGATGGGAGGTATCAAAGGACTTTTCAAAGGTG
GCGACATGTCTAAGAATGTGAGCCAGTCACAGATGGCAAAATTGAACCAACAAATGGCCAAAATGATGGA
TCCTAGGGTTCTTCATCACATGGGTGGTATGGCAGGACTTCAGTCAATGATGAGGCAGTTTCAACAGGGT
GCTGCTGGCAACATGAAAGGCATGATGGGATTCAATAATATGTAA

Translation (504 aa):
MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLN
KRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF
RAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVAN
AIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID
DFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILG
MIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL
LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQG
AAGNMKGMMGFNNM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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