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Report for CCDS9586.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9586.1 Public Homo sapiens 14 CDH24 24 110 108 CCDS HistoryNCBI Gene:64403Re-query CCDS DB by CCDS ID:9586.1Re-query CCDS DB by GeneID:64403See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 9586.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000487137.7 ENSP00000434821.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000487137.7Link to Ensembl Protein Viewer:ENSP00000434821.2Re-query CCDS DB by Nucleotide ID:ENST00000487137Re-query CCDS DB by Protein ID:ENSP00000434821
Original member Current member EBI ENST00000554034.5 ENSP00000452493.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554034.5Link to Ensembl Protein Viewer:ENSP00000452493.1Re-query CCDS DB by Nucleotide ID:ENST00000554034Re-query CCDS DB by Protein ID:ENSP00000452493
Original member Current member NCBI NM_144985.4 NP_659422.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144985.4Link to Protein Sequence:NP_659422.2Re-query CCDS DB by Nucleotide ID:NM_144985Re-query CCDS DB by Protein ID:NP_659422Link to BLAST:NP_659422.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659422.2 781 Q86UP0-2 781 100% 0 0

Chromosomal Locations for CCDS 9586.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 23047980 23048479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23049027 23049275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23049627 23049738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23049822 23049943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23052473 23052609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23053496 23053749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23054141 23054328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23054506 23054673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23054747 23054866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23055059 23055353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23055533 23055733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2346 nt):
ATGTGGGGCCTGGTGAGGCTCCTGCTGGCCTGGCTGGGTGGCTGGGGCTGCATGGGGCGTCTGGCAGCCC
CAGCCCGGGCCTGGGCAGGGTCCCGGGAACACCCAGGGCCTGCTCTGCTGCGGACTCGAAGGAGCTGGGT
CTGGAACCAGTTCTTTGTCATTGAGGAATATGCTGGTCCAGAGCCTGTTCTCATTGGCAAGCTGCACTCG
GATGTTGACCGGGGAGAGGGCCGCACCAAGTACCTGTTGACCGGGGAGGGGGCAGGCACCGTATTTGTGA
TTGATGAGGCCACAGGCAATATTCATGTTACCAAGAGCCTTGACCGGGAGGAAAAGGCGCAATATGTGCT
ACTGGCCCAAGCCGTGGACCGAGCCTCCAACCGGCCCCTGGAGCCCCCATCAGAGTTCATCATCAAAGTG
CAAGACATCAACGACAATCCACCCATTTTTCCCCTTGGGCCCTACCATGCCACCGTGCCCGAGATGTCCA
ATGTCGGGACATCAGTGATCCAGGTGACTGCTCACGATGCTGATGACCCCAGCTATGGGAACAGTGCCAA
GCTGGTGTACACTGTTCTGGATGGACTGCCTTTCTTCTCTGTGGACCCCCAGACTGGAGTGGTGCGTACA
GCCATCCCCAACATGGACCGGGAGACACAGGAGGAGTTCTTGGTGGTGATCCAGGCCAAGGACATGGGCG
GCCACATGGGGGGGCTGTCAGGCAGCACTACGGTGACTGTCACGCTCAGCGATGTCAACGACAACCCCCC
CAAGTTCCCACAGAGCCTATACCAGTTCTCCGTGGTGGAGACAGCTGGACCTGGCACACTGGTGGGCCGG
CTCCGGGCCCAGGACCCAGACCTGGGGGACAACGCCCTGATGGCATACAGCATCCTGGATGGGGAGGGGT
CTGAGGCCTTCAGCATCAGCACAGACTTGCAGGGTCGAGACGGGCTCCTCACTGTCCGCAAGCCCCTAGA
CTTTGAGAGCCAGCGCTCCTACTCCTTCCGTGTCGAGGCCACCAACACGCTCATTGACCCAGCCTATCTG
CGGCGAGGGCCCTTCAAGGATGTGGCCTCTGTGCGTGTGGCAGTGCAAGATGCCCCAGAGCCACCTGCCT
TCACCCAGGCTGCCTACCACCTGACAGTGCCTGAGAACAAGGCCCCGGGGACCCTGGTAGGCCAGATCTC
CGCGGCTGACCTGGACTCCCCTGCCAGCCCAATCAGATACTCCATCCTCCCCCACTCAGATCCGGAGCGT
TGCTTCTCTATCCAGCCCGAGGAAGGCACCATCCATACAGCAGCACCCCTGGATCGCGAGGCTCGCGCCT
GGCACAACCTCACTGTGCTGGCTACAGAGCTCGACAGTTCTGCACAGGCCTCGCGCGTGCAAGTGGCCAT
CCAGACCCTGGATGAGAATGACAATGCTCCCCAGCTGGCTGAGCCCTACGATACTTTTGTGTGTGACTCT
GCAGCTCCTGGCCAGCTGATTCAGGTCATCCGGGCCCTGGACAGAGATGAAGTTGGCAACAGTAGCCATG
TCTCCTTTCAAGGTCCTCTGGGCCCTGATGCCAACTTTACTGTCCAGGACAACCGAGATGGCTCCGCCAG
CCTGCTGCTGCCCTCCCGCCCTGCTCCACCCCGCCATGCCCCCTACTTGGTTCCCATAGAACTGTGGGAC
TGGGGGCAGCCGGCGCTGAGCAGCACTGCCACAGTGACTGTTAGTGTGTGCCGCTGCCAGCCTGACGGCT
CTGTGGCATCCTGCTGGCCTGAGGCTCACCTCTCAGCTGCTGGGCTCAGCACCGGCGCCCTGCTTGCCAT
CATCACCTGTGTGGGTGCCCTGCTTGCCCTGGTGGTGCTCTTCGTGGCCCTGCGGCGGCAGAAGCAAGAA
GCACTGATGGTACTGGAGGAGGAGGACGTCCGAGAGAACATCATCACCTACGACGACGAGGGCGGCGGCG
AGGAGGACACCGAGGCCTTCGACATCACGGCCTTGCAGAACCCGGACGGGGCGGCCCCCCCGGCGCCCGG
CCCTCCCGCGCGCCGAGACGTGTTGCCCCGGGCCCGGGTGTCGCGCCAGCCCAGACCCCCCGGCCCCGCC
GACGTGGCGCAGCTCCTGGCGCTGCGGCTCCGCGAGGCGGACGAGGACCCCGGCGTACCCCCGTACGACT
CGGTGCAGGTGTACGGCTACGAGGGCCGCGGCTCCTCTTGCGGCTCCCTCAGCTCCCTGGGCTCCGGCAG
CGAAGCCGGCGGCGCCCCCGGCCCCGCGGAGCCGCTGGACGACTGGGGTCCGCTCTTCCGCACCCTGGCC
GAGCTGTATGGGGCCAAGGAGCCCCCGGCCCCCTGA

Translation (781 aa):
MWGLVRLLLAWLGGWGCMGRLAAPARAWAGSREHPGPALLRTRRSWVWNQFFVIEEYAGPEPVLIGKLHS
DVDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNRPLEPPSEFIIKV
QDINDNPPIFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTVLDGLPFFSVDPQTGVVRT
AIPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLVGR
LRAQDPDLGDNALMAYSILDGEGSEAFSISTDLQGRDGLLTVRKPLDFESQRSYSFRVEATNTLIDPAYL
RRGPFKDVASVRVAVQDAPEPPAFTQAAYHLTVPENKAPGTLVGQISAADLDSPASPIRYSILPHSDPER
CFSIQPEEGTIHTAAPLDREARAWHNLTVLATELDSSAQASRVQVAIQTLDENDNAPQLAEPYDTFVCDS
AAPGQLIQVIRALDRDEVGNSSHVSFQGPLGPDANFTVQDNRDGSASLLLPSRPAPPRHAPYLVPIELWD
WGQPALSSTATVTVSVCRCQPDGSVASCWPEAHLSAAGLSTGALLAIITCVGALLALVVLFVALRRQKQE
ALMVLEEEDVRENIITYDDEGGGEEDTEAFDITALQNPDGAAPPAPGPPARRDVLPRARVSRQPRPPGPA
DVAQLLALRLREADEDPGVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEAGGAPGPAEPLDDWGPLFRTLA
ELYGAKEPPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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