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Report for CCDS9253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9253.1 Public Homo sapiens 12 TCTN2 24 110 108 CCDS HistoryNCBI Gene:79867Re-query CCDS DB by CCDS ID:9253.1Re-query CCDS DB by GeneID:79867See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9253.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303372.7 ENSP00000304941.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303372.7Link to Ensembl Protein Viewer:ENSP00000304941.5Re-query CCDS DB by Nucleotide ID:ENST00000303372Re-query CCDS DB by Protein ID:ENSP00000304941
Original member Current member NCBI NM_024809.5 NP_079085.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024809.5Link to Protein Sequence:NP_079085.2Re-query CCDS DB by Nucleotide ID:NM_024809Re-query CCDS DB by Protein ID:NP_079085Link to BLAST:NP_079085.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079085.2 697 Q96GX1-1 697 100% 0 0

Chromosomal Locations for CCDS 9253.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 123671241 123671322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123671507 123671614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123672056 123672132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123673615 123673810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123679189 123679289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123686836 123687035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123688051 123688177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123690533 123690674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123692658 123692723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123694842 123694976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123695220 123695297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123696415 123696495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123697087 123697198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123699704 123699810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123704532 123704688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123706726 123706851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123706985 123707073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123707604 123707713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGGGCTTCCAGCCTCCGGCCGCTCTTCTTTTGAGGCTTTTCCTTCTGCAGGGCATCCTGAGGCTTCTGT
GGGGGGACCTGGCTTTCATCCCTCCTTTTATCCGAATGTCCGGCCCTGCGGTCAGCGCGTCCCTGGTCGG
AGACACCGAGGGTGTGACCGTGTCCCTGGCAGTGCTGCAGGACGAGGCGGGAATATTGCCAATTCCGACG
TGTGGAGTGCTGAACAATGAGACGGAAGACTGGAGCGTGACTGTGATCCCCGGTGCGAAGGTGTTGGAAG
TGACAGTGAGGTGGAAGAGAGGTCTGGACTGGTGTTCCTCCAATGAGACAGATTCCTTCTCAGAGTCCCC
CTGTATCCTCCAGACCCTTCTGGTTTCAGCATCTCATAATTCATCCTGTTCAGCACATCTACTCATTCAA
GTGGAAATTTATGCCAACTCTTCTCTGACCCATAATGCCTCAGAGAACGTGACTGTCATTCCTAACCAGG
TGTATCAGCCCCTTGGCCCTTGTCCTTGTAATTTAACAGCTGGAGCCTGTGATGTTCGCTGCTGCTGTGA
CCAGGAATGCTCATCAAATTTAACAACGCTGTTCAGACGGTCCTGCTTCACCGGCGTGTTTGGAGGAGAC
GTCAATCCTCCTTTTGATCAGCTCTGCTCTGCTGGGACGACGACACGTGGTGTCCCCGATTGGTTTCCCT
TTCTGTGTGTGCAGTCCCCCCTTGCCAACACACCCTTCCTTGGTTACTTCTATCATGGTGCTGTTTCCCC
CAAACAGGACTCTTCCTTTGAAGTATATGTGGATACTGACGCAAAAGACTTTGCAGACTTTGGTTACAAA
CAAGGAGATCCCATTATGACTGTAAAGAAGGCATATTTTACTATTCCGCAGGTGTCCCTGGCTGGGCAGT
GTATGCAGAACGCCCCAGTGGCATTTCTTCACAATTTTGATGTTAAATGCGTTACTAATTTGGAACTATA
CCAAGAACGAGATGGTATTATCAATGCGAAGATAAAGAATGTTGCCTTAGGAGGCATAGTTACACCAAAA
GTGATCTATGAGGAAGCAACTGACCTAGACAAATTCATCACCAATACAGAAACTCCTTTAAATAACGGAT
CAACCCCTAGAATTGTGAATGTGGAAGAACATTATATTTTCAAATGGAATAATAATACCATCAGTGAAAT
AAATGTTAAAATTTTTAGGGCAGAGATTAATGCCCACCAGAAAGGGATAATGACACAGAGATTTGTAGTA
AAATTTTTAAGCTATAATAGTGGTAATGAAGAAGAATTATCTGGAAATCCAGGTTACCAACTTGGCAAGC
CTGTCCGAGCTCTAAATATCAACAGGATGAATAATGTCACGACTTTACATCTTTGGCAATCGGCTGGAAG
GGGTCTGTGTACATCAGCAACTTTCAAACCCATTTTATTTGGAGAAAATGTACTCTCTGGATGCCTGTTA
GAAGTCGGGATTAATGAAAATTGTACTCAGCTCAGGGAGAATGCTGTTGAAAGACTTGATTCATTAATAC
AAGCGACTCACGTTGCAATGAGAGGCAACTCCGATTACGCTGATCTTAGTGATGGCTGGCTCGAAATAAT
ACGTGTAGATGCCCCTGATCCAGGTGCAGACCCGCTGGCTAGCAGTGTGAACGGCATGTGCCTGGATATT
CCTGCTCACCTGAGCATCCGCATCCTCATCTCGGATGCTGGCGCGGTGGAAGGGATTACTCAGCAGGAGA
TACTCGGTGTAGAGACAAGGTTCTCCTCAGTGAACTGGCAGTACCAGTGTGGGCTTACCTGTGAGCACAA
GGCCGACCTTCTCCCTATCAGTGCATCCGTCCAGTTTATTAAAATTCCTGCACAGTTACCCCACCCCCTG
ACAAGATTCCAGATCAATTATACAGAGTATGACTGCAACAGAAATGAGGTGTGTTGGCCGCAGCTTCTAT
ATCCATGGACTCAGTATTATCAAGGGGAGCTGCATTCTCAGTGTGTTGCTAAGGGCTTACTGTTGCTGTT
GTTCCTCACATTGGCCTTGTTCCTCAGCAACCCCTGGACCAGAATATGCAAAGCCTATAGTTAG

Translation (697 aa):
MGFQPPAALLLRLFLLQGILRLLWGDLAFIPPFIRMSGPAVSASLVGDTEGVTVSLAVLQDEAGILPIPT
CGVLNNETEDWSVTVIPGAKVLEVTVRWKRGLDWCSSNETDSFSESPCILQTLLVSASHNSSCSAHLLIQ
VEIYANSSLTHNASENVTVIPNQVYQPLGPCPCNLTAGACDVRCCCDQECSSNLTTLFRRSCFTGVFGGD
VNPPFDQLCSAGTTTRGVPDWFPFLCVQSPLANTPFLGYFYHGAVSPKQDSSFEVYVDTDAKDFADFGYK
QGDPIMTVKKAYFTIPQVSLAGQCMQNAPVAFLHNFDVKCVTNLELYQERDGIINAKIKNVALGGIVTPK
VIYEEATDLDKFITNTETPLNNGSTPRIVNVEEHYIFKWNNNTISEINVKIFRAEINAHQKGIMTQRFVV
KFLSYNSGNEEELSGNPGYQLGKPVRALNINRMNNVTTLHLWQSAGRGLCTSATFKPILFGENVLSGCLL
EVGINENCTQLRENAVERLDSLIQATHVAMRGNSDYADLSDGWLEIIRVDAPDPGADPLASSVNGMCLDI
PAHLSIRILISDAGAVEGITQQEILGVETRFSSVNWQYQCGLTCEHKADLLPISASVQFIKIPAQLPHPL
TRFQINYTEYDCNRNEVCWPQLLYPWTQYYQGELHSQCVAKGLLLLLFLTLALFLSNPWTRICKAYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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