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Report for CCDS9227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9227.1 Public Homo sapiens 12 B3GNT4 24 110 108 CCDS HistoryNCBI Gene:79369Re-query CCDS DB by CCDS ID:9227.1Re-query CCDS DB by GeneID:79369See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324189.5 ENSP00000319636.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324189.5Link to Ensembl Protein Viewer:ENSP00000319636.4Re-query CCDS DB by Nucleotide ID:ENST00000324189Re-query CCDS DB by Protein ID:ENSP00000319636
Original member Current member NCBI NM_030765.4 NP_110392.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030765.4Link to Protein Sequence:NP_110392.1Re-query CCDS DB by Nucleotide ID:NM_030765Re-query CCDS DB by Protein ID:NP_110392Link to BLAST:NP_110392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110392.1 378 Q9C0J1-1 378 100% 0 0

Chromosomal Locations for CCDS 9227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 122204619 122204684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122206318 122207388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGCTTCCTCCCCAGCCTTCCGCAGCCCACCAGGGAAGGGGCGGTAGGAGTGGCCTTTTACCAAAGGGAC
CGGCGATGCTCTGCAGGCTGTGCTGGCTGGTCTCGTACAGCTTGGCTGTGCTGTTGCTCGGCTGCCTGCT
CTTCCTGAGGAAGGCGGCCAAGCCCGCAGGAGACCCCACGGCCCACCAGCCTTTCTGGGCTCCCCCAACA
CCCCGTCACAGCCGGTGTCCACCCAACCACACAGTGTCTAGCGCCTCTCTGTCCCTGCCTAGCCGTCACC
GTCTCTTCTTGACCTATCGTCACTGCCGAAATTTCTCTATCTTGCTGGAGCCTTCAGGCTGTTCCAAGGA
TACCTTCTTGCTCCTGGCCATCAAGTCACAGCCTGGTCACGTGGAGCGACGTGCGGCTATCCGCAGCACG
TGGGGCAGGGTGGGGGGATGGGCTAGGGGCCGGCAGCTGAAGCTGGTGTTCCTCCTAGGGGTGGCAGGAT
CCGCTCCCCCAGCCCAGCTGCTGGCCTATGAGAGTAGGGAGTTTGATGACATCCTCCAGTGGGACTTCAC
TGAGGACTTCTTCAACCTGACGCTCAAGGAGCTGCACCTGCAGCGCTGGGTGGTGGCTGCCTGCCCCCAG
GCCCATTTCATGCTAAAGGGAGATGACGATGTCTTTGTCCACGTCCCCAACGTGTTAGAGTTCCTGGATG
GCTGGGACCCAGCCCAGGACCTCCTGGTGGGAGATGTCATCCGCCAAGCCCTGCCCAACAGGAACACTAA
GGTCAAATACTTCATCCCACCCTCAATGTACAGGGCCACCCACTACCCACCCTATGCTGGTGGGGGAGGA
TATGTCATGTCCAGAGCCACAGTGCGGCGCCTCCAGGCTATCATGGAAGATGCTGAACTCTTCCCCATTG
ATGATGTCTTTGTGGGTATGTGCCTGAGGCGGCTGGGGCTGAGCCCTATGCACCATGCTGGCTTCAAGAC
ATTTGGAATCCGGCGGCCCCTGGACCCCTTAGACCCCTGCCTGTATAGGGGGCTCCTGCTGGTTCACCGC
CTCAGCCCCCTCGAGATGTGGACCATGTGGGCACTGGTGACAGATGAGGGGCTCAAGTGTGCAGCTGGCC
CCATACCCCAGCGCTGA

Translation (378 aa):
MLPPQPSAAHQGRGGRSGLLPKGPAMLCRLCWLVSYSLAVLLLGCLLFLRKAAKPAGDPTAHQPFWAPPT
PRHSRCPPNHTVSSASLSLPSRHRLFLTYRHCRNFSILLEPSGCSKDTFLLLAIKSQPGHVERRAAIRST
WGRVGGWARGRQLKLVFLLGVAGSAPPAQLLAYESREFDDILQWDFTEDFFNLTLKELHLQRWVVAACPQ
AHFMLKGDDDVFVHVPNVLEFLDGWDPAQDLLVGDVIRQALPNRNTKVKYFIPPSMYRATHYPPYAGGGG
YVMSRATVRRLQAIMEDAELFPIDDVFVGMCLRRLGLSPMHHAGFKTFGIRRPLDPLDPCLYRGLLLVHR
LSPLEMWTMWALVTDEGLKCAAGPIPQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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