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Report for CCDS9075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9075.1 Public Homo sapiens 12 DEPDC4 24 110 108 CCDS HistoryNCBI Gene:120863Re-query CCDS DB by CCDS ID:9075.1Re-query CCDS DB by GeneID:120863See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9075.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378244.6 ENSP00000367490.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378244.6Link to Ensembl Protein Viewer:ENSP00000367490.2Re-query CCDS DB by Nucleotide ID:ENST00000378244Re-query CCDS DB by Protein ID:ENSP00000367490
Original member Current member EBI ENST00000416321.5 ENSP00000396234.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416321.5Link to Ensembl Protein Viewer:ENSP00000396234.1Re-query CCDS DB by Nucleotide ID:ENST00000416321Re-query CCDS DB by Protein ID:ENSP00000396234
Original member Current member NCBI NM_152317.4 NP_689530.1 Accepted alive Link to Nucleotide Sequence:NM_152317.4Link to Protein Sequence:NP_689530.1Re-query CCDS DB by Nucleotide ID:NM_152317Re-query CCDS DB by Protein ID:NP_689530Link to BLAST:NP_689530.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689530.1 294 Q8N2C3-1 294 100% 0 0

Chromosomal Locations for CCDS 9075.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 100252530 100252536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100256049 100256226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100262264 100262409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100263497 100263893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100266920 100267076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGTGCCAGGGGAGGAGCCAGCGCGCGAGCTTATGGCGGTTCTTTTGACTCCGAGGTTCCGTAGACTTG
TCAGTCAGAACGAGCTTCCGGGCCCAGGGCTGAACGGGCCAAGTTCCAGGAACCGTAGAGATGGCTTCTG
CCGGAAAAGGAGGACAGGATGCTCTGGTCCTTTTCAAGCTACTCAGCTATGGGATGGTATTATTCACTCT
CTTCAGGCCCAAGTGGAAATAAAAAGAAGGAGGCATCATTTACAGACATACAAAGACTGTTTCACTGGTT
CTGATGCTGTCGATGTGGTCTTAAGTCATCTTATGCAAAACACGTGCCTAAGTAGCAATGACATCTCTTG
TCTTAAAGGGGTTCATCTTTGCCAAGTTCTAATGAATCACAAAGTATTTGAACCAGTAGGAATGAAGAAG
CTTTTCAAAAAAGAAAAGGAATTAGAATTTGAAGATTCCAACATTAGTCTCTACAGGTTTCTAGGCAATA
AATCATCTTACGATTGTTGCAAAAGACAAAAGGATGCTGAGAATGAGTTCAATGAAACCTTGAGACCAGG
ATATGAAATGATTTCAAATCCTCTAGCACAGGAGATTGGTGAGGAAAGAATTGAGGAACTTATTCATACA
ATAAATGGGAATCCAGCTTTATGTCCAAATATCACAGTTCAGAAACCTTTTCTCCGGCTTTCAAAAGAAG
ATGTTTGGAAAGAACAAACATTATTATGTCTTCTTCAATTGATTCACCTTCCATTCTTGGACAATATTTT
GGAGCCTCCAGTTAAAACACAAAATCTTCAACTAAACAAAGAGGAAGATCTTGTTATCACTAACACTTGC
CTAGACAGAGAACTTATTCCAAGCTTATGTCTACCTGAAAAATGA

Translation (294 aa):
MVPGEEPARELMAVLLTPRFRRLVSQNELPGPGLNGPSSRNRRDGFCRKRRTGCSGPFQATQLWDGIIHS
LQAQVEIKRRRHHLQTYKDCFTGSDAVDVVLSHLMQNTCLSSNDISCLKGVHLCQVLMNHKVFEPVGMKK
LFKKEKELEFEDSNISLYRFLGNKSSYDCCKRQKDAENEFNETLRPGYEMISNPLAQEIGEERIEELIHT
INGNPALCPNITVQKPFLRLSKEDVWKEQTLLCLLQLIHLPFLDNILEPPVKTQNLQLNKEEDLVITNTC
LDRELIPSLCLPEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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