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Report for CCDS90.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90.1 Public Homo sapiens 1 UTS2 24 110 108 CCDS HistoryNCBI Gene:10911Re-query CCDS DB by CCDS ID:90.1Re-query CCDS DB by GeneID:10911See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000054668.5 ENSP00000054668.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000054668.5Link to Ensembl Protein Viewer:ENSP00000054668.5Re-query CCDS DB by Nucleotide ID:ENST00000054668Re-query CCDS DB by Protein ID:ENSP00000054668
Original member Current member NCBI NM_021995.2 NP_068835.1 Accepted alive Link to Nucleotide Sequence:NM_021995.2Link to Protein Sequence:NP_068835.1Re-query CCDS DB by Nucleotide ID:NM_021995Re-query CCDS DB by Protein ID:NP_068835Link to BLAST:NP_068835.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068835.1 139 O95399-2 139 100% 0 0

Chromosomal Locations for CCDS 90.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 7847766 7847882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7849640 7849683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7850812 7850922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7852901 7852923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7853307 7853431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGAAACCAACGTATTTCATCTTATGCTCTGCGTCACTTCTGCTCGGACTCATAAATCCACGTCTCTTT
GCTTTGGCCACTTCAACTCATATCCAAGCCTTCCTTTAATTCATGATTTATTGCTGGAAATATCCTTTCA
ACTCTCAGCACCTCATGAAGACGCGCGCTTAACTCCGGAGGAGCTAGAAAGAGCTTCCCTTCTACAGATA
CTGCCAGAGATGCTGGGTGCAGAAAGAGGGGATATTCTCAGGAAAGCAGACTCAAGTACCAACATTTTTA
ACCCAAGAGGAAATTTGAGAAAGTTTCAGGATTTCTCTGGACAAGATCCTAACATTTTACTGAGTCATCT
TTTGGCCAGAATCTGGAAACCATACAAGAAACGTGAGACTCCTGATTGCTTCTGGAAATACTGTGTCTGA

Translation (139 aa):
METNVFHLMLCVTSARTHKSTSLCFGHFNSYPSLPLIHDLLLEISFQLSAPHEDARLTPEELERASLLQI
LPEMLGAERGDILRKADSSTNIFNPRGNLRKFQDFSGQDPNILLSHLLARIWKPYKKRETPDCFWKYCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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