NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8806.1 Public Homo sapiens 12 LETMD1 24 110 108 CCDS HistoryNCBI Gene:25875Re-query CCDS DB by CCDS ID:8806.1Re-query CCDS DB by GeneID:25875See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8806.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262055.9 ENSP00000262055.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262055.9Link to Ensembl Protein Viewer:ENSP00000262055.4Re-query CCDS DB by Nucleotide ID:ENST00000262055Re-query CCDS DB by Protein ID:ENSP00000262055
Original member Current member NCBI NM_015416.5 NP_056231.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015416.5Link to Protein Sequence:NP_056231.3Re-query CCDS DB by Nucleotide ID:NM_015416Re-query CCDS DB by Protein ID:NP_056231Link to BLAST:NP_056231.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056231.3 360 Q6P1Q0-1 360 100% 0 0

Chromosomal Locations for CCDS 8806.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51048357 51048478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51049034 51049185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51052092 51052207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51053778 51053860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51055835 51056021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51056144 51056245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51056350 51056502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51058032 51058128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51059361 51059431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGCGCTCTCCAGGGTGTGCTGGGCTCGGTCGGCTGTGTGGGGCTCGGCAGTCACCCCTGGACATTTTG
TCACCCGGAGGCTGCAACTTGGTCGCTCTGGCCTGGCTTGGGGGGCCCCTCGGTCTTCAAAGCTTCACCT
TTCTCCAAAGGCAGATGTGAAGAACTTGATGTCTTATGTGGTAACCAAGACAAAAGCGATTAATGGGAAA
TACCATCGTTTCTTGGGTCGTCATTTCCCCCGCTTCTATGTCCTGTACACAATCTTCATGAAAGGATTGC
AGATGTTATGGGCTGATGCCAAAAAGGCTAGAAGAATAAAGACAAATATGTGGAAGCACAATATAAAGTT
TCATCAACTTCCATACCGGGAGATGGAGCATTTGAGACAGTTCCGCCAAGACGTCACCAAGTGTCTTTTC
CTAGGTATTATTTCCATTCCACCTTTTGCCAACTACCTGGTCTTCTTGCTAATGTACCTGTTTCCCAGGC
AACTACTGATCAGGCATTTCTGGACCCCAAAACAACAAACTGATTTCTTAGATATCTATCATGCTTTCCG
GAAGCAGTCCCACCCAGAAATTATTAGTTATTTAGAAAAGGTCATCCCTCTCATTTCTGATGCAGGACTC
CGGTGGCGTCTGACAGATCTGTGCACCAAGATACAGCGTGGTACCCACCCAGCAATACATGATATCTTGG
CTCTGAGAGAGTGTTTCTCTAACCATCCTCTGGGCATGAACCAACTCCAGGCTTTGCACGTGAAAGCCTT
GAGCCGGGCCATGCTTCTCACATCTTACCTGCCTCCTCCCTTGTTGAGACATCGTTTGAAGACTCATACA
ACTGTGATTCACCAACTGGACAAGGCTTTGGCAAAGCTGGGGATTGGCCAGCTGACTGCTCAGGAAGTAA
AATCGGCTTGTTATCTCCGTGGCCTGAATTCTACGCATATTGGTGAAGATAGGTGTCGAACTTGGCTGGG
AGAATGGCTGCAGATTTCCTGCAGCCTGAAAGAAGCTGAGCTGTCTCTCTTGCTGCACAACGTGGTCCTG
CTCTCCACCAACTACCTTGGGACAAGGCGCTGA

Translation (360 aa):
MALSRVCWARSAVWGSAVTPGHFVTRRLQLGRSGLAWGAPRSSKLHLSPKADVKNLMSYVVTKTKAINGK
YHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIKFHQLPYREMEHLRQFRQDVTKCLF
LGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQTDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGL
RWRLTDLCTKIQRGTHPAIHDILALRECFSNHPLGMNQLQALHVKALSRAMLLTSYLPPPLLRHRLKTHT
TVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVL
LSTNYLGTRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH