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Report for CCDS8610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8610.1 Public Homo sapiens 12 CLEC12B 24 110 108 CCDS HistoryNCBI Gene:387837Re-query CCDS DB by CCDS ID:8610.1Re-query CCDS DB by GeneID:387837See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8610.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396502.5 ENSP00000379759.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396502.5Link to Ensembl Protein Viewer:ENSP00000379759.1Re-query CCDS DB by Nucleotide ID:ENST00000396502Re-query CCDS DB by Protein ID:ENSP00000379759
Original member Current member EBI ENST00000544853.5 ENSP00000439561.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544853.5Link to Ensembl Protein Viewer:ENSP00000439561.1Re-query CCDS DB by Nucleotide ID:ENST00000544853Re-query CCDS DB by Protein ID:ENSP00000439561
Original member Current member NCBI NM_205852.3 NP_995324.2 Accepted alive Link to Nucleotide Sequence:NM_205852.3Link to Protein Sequence:NP_995324.2Re-query CCDS DB by Nucleotide ID:NM_205852Re-query CCDS DB by Protein ID:NP_995324Link to BLAST:NP_995324.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_995324.2 232 Q2HXU8-2 232 100% 0 0

Chromosomal Locations for CCDS 8610.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 10010760 10010850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10012785 10012883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10014523 10014741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10015252 10015406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10015612 10015746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGTCTGAAGAAGTGACCTACGCGACACTCACATTTCAGGATTCTGCTGGAGCAAGGAATAACCGAGATG
GAAATAACCTAAGAAAAAGAGGGCATCCAGCTCCATCTCCCATTTGGCGTCATGCTGCTCTGGGTCTGGT
AACTCTTTGCCTGATGTTGCTGATTGGGCTGGTGACATTGGGGATGATGTTTTTGCAGATATCTAATGAC
ATTAACTCAGATTCAGAGAAATTGAGTCAACTTCAGAAAACCATCCAACAGCAGCAGGATAACTTATCCC
AGCAACTGGGCAACTCCAACAACTTGTCCATGGAGGAGGAATTTCTCAAGTCACAGATCTCCAGTGTACT
GAAGAGGCAGGAACAAATGGCCATCAAACTGTGCCAAGAGCTAATCATTCATACTTCAGACCACAGATGT
AATCCATGTCCTAAGATGTGGCAATGGTACCAAAATAGTTGCTACTATTTTACAACAAATGAGGAGAAAA
CCTGGGCTAACAGTAGAAAGGACTGCATAGACAAGAACTCCACCCTAGTGAAGATAGACAGTTTGGAAGA
AAAGGATTTTCTTATGTCACAGCCATTACTCATGTTTTCGTTCTTTTGGCTGGGATTATCATGGGACTCC
TCTGGCAGAAGTTGGTTCTGGGAAGATGGCTCTGTTCCCTCTCCATCCTTGTACGTCTCTAACTATTGA

Translation (232 aa):
MSEEVTYATLTFQDSAGARNNRDGNNLRKRGHPAPSPIWRHAALGLVTLCLMLLIGLVTLGMMFLQISND
INSDSEKLSQLQKTIQQQQDNLSQQLGNSNNLSMEEEFLKSQISSVLKRQEQMAIKLCQELIIHTSDHRC
NPCPKMWQWYQNSCYYFTTNEEKTWANSRKDCIDKNSTLVKIDSLEEKDFLMSQPLLMFSFFWLGLSWDS
SGRSWFWEDGSVPSPSLYVSNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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